Query= MSMg01no062_f17.b1 MSMg01no062_f17.b1 CHROMAT_FILE:
MSMg01no062_f17.b1 PHD_FILE: MSMg01no062_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:52 2005
(720 letters)
>mm_chr3_148987947_148989066
Length = 1120
Score = 1317 bits (681), Expect = 0.0
Identities = 711/721 (98%), Gaps = 2/721 (0%)
Strand = Plus / Plus
Query: 1 tggaattttccgtctctgaagaagtgcctttaatgagcagccgaggctctggtctattga 60
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 201 tggaattttccgtctctgaagaagtgtgtttactgagcagccgaggctctggtctattga 260
Query: 61 tgttcttcatatatgcatcatgatgaaatactctgggagtctagagatgccaatggaatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tgttcttcatatatgcatcatgatgaaatactctgggagtctagagatgccaatagaatt 320
Query: 121 ttataatcattttatctgggtctctgcttttcactctacaaagaagcccaacatgtatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttataatcattttatctgggtctctgcttttcactctacaaagaagcccaacatgtatta 380
Query: 181 gtgcacactgcttgggtagataggacttgtttagttgagggtaaaggaccataggtgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcacactgcttgggtagataggacttgtttagttgagggtaaaggaccataggtgatg 440
Query: 241 tcagcacgtgtggttatactgtggtaccgaactggacatcatggtaatggaccaaaagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagcacgtgtggttatactgtggtaccgaactggacatcatggtaatggaccaaaagtg 500
Query: 301 agaccaattgttcttaaggaaaaaggaaagaactctcaattgcccgtttttggatggtta 360
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaccaattgttcaaaaggaaaaaggaaagaactctcaattgcccgtttttggatggtta 560
Query: 361 catgaaatatctgtgatttcggtctttctgtcatctcatgtcaaattgcctctgtaattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 catgaaatatctgtgatttcggtctttctgtcatctcatgtcaaattgcctctgtaactc 620
Query: 421 accccc-gaaacagatcaatacaattttactatgctctgtgtgactcctggagctaccct 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accccccgaaacagatcaatacaattttactatgctctgtgtgactcctggagctaccct 680
Query: 480 tgccttgagctcgggagcctgagctgtgcctgctggcttgcttattggggtattgaatgc 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgccttgagctcgggagcctgagctgtgcctgctggcttgcttattggggtattgaatgc 740
Query: 540 atgttgtactgtctgctggcctgggatatgtgacatccatgctggatagtcttcctctga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgttgtactgtctgctggcctgggatatgtgacatccatgctggatagtcttcctctga 800
Query: 600 ggagaattttccagtggagcgtctgtttcttcccaacatttattctccccagaatctgta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggagaattttccagtggagcgtctgtttcttcccaacatttattctccccagaatctgta 860
Query: 660 gctatatacgaagtacttcattttcatatttttggtgtttctgagtactggattaagtca 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 861 gctatatacgaagtacttcattttcatatttt-ggtgtttctgagtactggattaagtca 919
Query: 720 g 720
|
Sbjct: 920 g 920
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space: 788100
Effective search space used: 788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_f17.g1 MSMg01no062_f17.g1 CHROMAT_FILE:
MSMg01no062_f17.g1 PHD_FILE: MSMg01no062_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:52 2005
(501 letters)
>mm_chr3_149068451_149069350
Length = 900
Score = 795 bits (411), Expect = 0.0
Identities = 477/509 (93%), Gaps = 21/509 (4%)
Strand = Plus / Minus
Query: 1 gacttccatcaaataacaatcagggacaaaatccttgggatggagccacaagattgaaat 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 856 gacttccatcaaataacaatcagggacaaaatcaatgggatggagccacaagattgaaat 797
Query: 61 gatttgagaggggagactg---gaagaaatgtctctcataaccaggggacagttcagtcc 117
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gatttgagaggggagactggaagaagaaatgtctctcataaccaggggacagttcagtcc 737
Query: 118 ctactagaagaatctgggactcgggttccctaga-agtatgaagtatgaagtacagtgtg 176
| ||||| ||||||||||||||||||| |||||| | ||||||||||| ||||
Sbjct: 736 ccactagcagaatctgggactcgggtttcctagaca--------tatgaagtacaatgtg 685
Query: 177 ccatccccctaacagcagacgtagtgagatttcagcacagcgagcgagcagttctctgct 236
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccatccccctaacagcagacatagtgagatttcagcacagcgagcgagcagttctctgct 625
Query: 237 tcctaatacaggctgtgctttcttgtgagaggggtggggtggggtgctttcattagacag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcctaatacaggctgtgctttcttgtgagaggggtggggtggggtgctttcattagacag 565
Query: 297 tttgtcatgtgattgtgatgc----tttttataaccatttatttgctaattacatagcaa 352
||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 564 tttgtcatgtgattgtgatgcaaaa----tagaaccatttatttgctaattacatagcaa 509
Query: 353 tggcacggattttttttttaatcacatgtccttcatcctggaggaaaaaaatatatcccc 412
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tggcatgga-tttttttttaatcacatgtccttcatcctggaggaaaaaaatatatcccc 450
Query: 413 atttttgttacaactcaaagaattggttctgaataagcaatacctattatgtttatgcat 472
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 449 atttttgttacaactcaaagacttggttctgaataagcaatacatattatgtttatgcat 390
Query: 473 atattttcataaccaactaaaactttagg 501
|||||||||||||||||||||||||||||
Sbjct: 389 atattttcataaccaactaaaactttagg 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 900
Length adjustment: 10
Effective length of query: 491
Effective length of database: 890
Effective search space: 436990
Effective search space used: 436990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
