Query= MSMg01no062_i16.b1 MSMg01no062_i16.b1 CHROMAT_FILE:
MSMg01no062_i16.b1 PHD_FILE: MSMg01no062_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:14 2005
(795 letters)
>mm_chr3_54710908_54712100
Length = 1193
Score = 1415 bits (732), Expect = 0.0
Identities = 769/782 (98%), Gaps = 2/782 (0%)
Strand = Plus / Minus
Query: 14 gaattctgcattacatgaaggccattaaatgttgagatctgggtctttccttttgctcag 73
||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 993 gaattctgcgttacatgaagggtaataaatgttgagatctgggtctttccttttgctcag 934
Query: 74 tactcagatgaaataacccacttcatatgacaaaaactgaatgcttccaaaaaacttagc 133
|| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 933 tattcagatgaaataaatcacttcatatgacgaaaactgaatgcttccaaaaaacttagc 874
Query: 134 tggtgcaagctggcaattactaagcattattcttcttaaatgcccattttttttcccaca 193
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 873 tggtgcaagctggcaattactaagcattattcttcttaaatgcccattttttt--ccaca 816
Query: 194 aaaagcttcatcacactttgagtgtcatccatagagggctggaagaatgagggaaatcat 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aaaagcttcatcacactttgagtgtcatccatagagggctggaagaatgagggaaatcat 756
Query: 254 tcttggcaaaattgatttgaacgtgttatactaaatacttggctaatatccagataacac 313
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tcttggcaaaattgatctgaacgtgttatactaaatacttggctaatatccagataacac 696
Query: 314 gtgcaatttatataatatgtaatcaactcagttctacttgtagctgcttttccagagatg 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 695 gtgcaatttatataatatgtaatcaactcagttctacttgtagctgcttttccagagacg 636
Query: 374 atgattcataaactcaagtaaatgttagagctaagttttaagtacattaagtcaaagact 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atgattcataaactcaagtaaatgttagagctaagttttaagtacattaagtcaaagact 576
Query: 434 ctgtgagctgggatctctgttgagaagtgcaagatccaccacatttatacaccctggtgg 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctgtgagctgggatctctgttgagaagtgcaagatccaccacatttatacaccctggtgg 516
Query: 494 tgcttcaatactctgtctgaggcttcgctttaagcaaacgcagaaatgtatttgtaaaga 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgcttcaatactctgtctgaggcttcgctttaagcaaacgcagaaatgtatttgtaaaga 456
Query: 554 tatggaaatgaaaagcgtcctggtaaactcttttgttaatgctaaagctctctgtagaca 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tatggaaatgaaaagcgtcctggtaaactcttttgttaatgctaaagctctctgtagaca 396
Query: 614 agctgtattatctcctgtctttcaatttgtgcttatgcatgtaatgtgatggatcagtta 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agctgtattatctcctgtctttcaatttgtgcttatgcatgtaatgtgatggatcagtta 336
Query: 674 tgacttttagactgtagggtattgttataagcaaaactagagaactagatatatttgata 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgacttttagactgtagggtattgttataagcaaaactagagaactagatatatttgata 276
Query: 734 atctgcatctcttctctgtgcctcaattatcaaggtattttaaatggacataaatttgga 793
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atctgcatctcttctctgcgcctcaattatcaaggtattttaaatggacataaatttgga 216
Query: 794 gt 795
||
Sbjct: 215 gt 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 795
Length of database: 1193
Length adjustment: 10
Effective length of query: 785
Effective length of database: 1183
Effective search space: 928655
Effective search space used: 928655
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_i16.g1 MSMg01no062_i16.g1 CHROMAT_FILE:
MSMg01no062_i16.g1 PHD_FILE: MSMg01no062_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:15 2005
(632 letters)
>mm_chr3_54626792_54627823
Length = 1032
Score = 1123 bits (581), Expect = 0.0
Identities = 622/639 (97%), Gaps = 9/639 (1%)
Strand = Plus / Plus
Query: 1 caggtataacagtaagcatcaggcatatcaccacagaacttaacaaagtctttctgtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 caggtataacagtaagcatcaggcatatcaccacagaacttaacaaagtctttctgtata 255
Query: 61 aagaatttacgaagaactgttagctgagtaacgagactaagaacacaattaataatgggc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 256 aagaatttacgaagaactgttagctgagtaacgagactaagaacgcaattaataatgggc 315
Query: 121 aaaatacttgatcagacacttcaaatgatatctatattgcactggaggcctagtcttgac 180
||||||||||||||||||||||||||||||||| |||||| |||| | |||||||||||
Sbjct: 316 aaaatacttgatcagacacttcaaatgatatctgcattgcattggaagactagtcttgac 375
Query: 181 attacctctcaatagaaaatacaaattagatcccagggaggtagggatagtattcatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 attacctctcaatagaaaatacaaattagatcccagggaggtagggatagtattcatcaa 435
Query: 241 gatggctgcagttatgacagcagtgctggcatagaatctgcagcaacttggatgtccaca 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 436 gatggctgcagttatgacagcagtgctggca-agaatctgcagcaacttggatgtccaca 494
Query: 301 cacctacaatgggccttc------tttttttaatatttattattatact-taagtacact 353
|||||||||||||||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 495 cacctacaatgggccttctttttttttttttaatatttattattata-tgtaagtacact 553
Query: 354 gtagctatcttcagaagcaccagaagaggatgtcagatctcattacagatggttgtgagc 413
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtagctattttcagaagcaccagaagaggatgtcagatctcattacagatggttgtgagc 613
Query: 414 caccaggtggctgctgggatttgaactcaggaccttcagaagagcagtcaatgttcttaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caccaggtggctgctgggatttgaactcaggaccttcagaagagcagtcaatgttcttaa 673
Query: 474 ccgctgagccatatctccagcccacaatgggccttcaagatggcacaagtacttgtcaag 533
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 674 ccgctgagccatatctccagcccacaatgggccttcaagatggcacaagtacgtgtcaag 733
Query: 534 tggcttgtaacttccatatggtaaaacctttgcagggagagttctagaacgctgtgcttt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tggcttgtaacttccatatggtaaaacctttgcagggagagttctagaacgctgtgcttt 793
Query: 594 ctactccactgctctgaaggtggggcttggatgccaaca 632
|||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ctactccactgctctgaaggtggggcttggatgccaaca 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
