BAC Information

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BAC

Clone NameMSMg01-062I17
Chromosome3 (Build37)
Map Location 13,155,912 - 13,156,427
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062I17.T7 (MSMg01no062_i17.b1)MSMg01-062I17.TJ (MSMg01no062_i17.g1)
ACCAG288494AG288495
length1,1571,196
length of high quality
(start - end)		771 (39 - 809)733 (90 - 822)
definitionCHROMAT_FILE: MSMg01no062_i17.b1 PHD_FILE: MSMg01no062_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:15 2005CHROMAT_FILE: MSMg01no062_i17.g1 PHD_FILE: MSMg01no062_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTTTTTTTTTNTTACAGTGGGCGCTATAGACTCCTAAGGGAGAGGATCC
GCGGAATTCATGTTTTTCACATTTCCCATTGGGCAAAACCTTATTTTAAT
GATAACTTATTGAAGCCTTGAACTATACTCATAGCCACCATTTTAAACAT
TATTACCACCAAAAAGATAAAAAGGTTTCTTTATTATTAGATAGGTATTC
ATTTTTTCCCATTTGATTGTTAGCAATGGCATGTCACTCAAAAGAAAAAT
CGCATTAGAAAAGTAGAAATAGACATGCTAATTAGATAATTTAGTTTCTT
ATGCAATATATATCAAAATGTTCTACTCTGCACCATTTATACACAATTTC
ATCAAGAGAAATTTTATGCTGACAGGAATGTGATATGGAGAGGCCAGATC
CTTACAGATACAGATGTGGATGCTTGCAGACAAACATCAGATTGAACAGG
CAGATGCCATTAGAGGAGTTAGGGGAAAGACTGAAGGAGATGAACTAGTT
TGCAACTCATGCAGGTTTCAACAGAGTTAGGGGAAAGACTACAGAAGCTG
AATGGGTTTGCAGCCCCACAGGAAGAACAAAAATATCAACCAACCAGACT
AAACCACCAATCAAAGAATACACATGGAGAGAATCATGGCTCCAACTGCA
TATGTAGCAGAGGATGGCTTTGTCTGGTATCAATAGTTGGCAAAGCCCTT
GTTCCTTTGAAGGCTTGATGCCTCAGTGTAGGGGAATGTTAGGGCAGTAG
GGCTGGAGTGGATGGGGAACACCCTTGTGGAGGCAGGGAGGAGAGGGGTC
TGATAGGGGTTATTTGGAGAGGAAATCAGGAAGGGGGATAACACTTGAAA
TTAACCCACATGATAACCCATAAAAAATTCTTAATAAAAATGAATGAAGT
ATGGATCATTATAGAAATGAAAGTAATCAATGAAAAGAACCAGAATAATG
AACGATGTTATGCTAATGTTAAAAATTATTTAGGGATATCCGGACTCGTT
AAAGGTTTATGTTCTTTTCTATAAATTCTTTTTAATGGTTTTGTAAACTA
ATTGGTTTATTTGTGTAAAATTATCTAATTTTTTCTTTATACAATCCTGG
TTGTTTGTAAAAATACTAAATCTTTTTTCTTCTTCTATAATCTGTATGAT
GCTACTG

CCCTTTCCTTTTTTTTAACAAGTGATGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTAACTGAGGAATACAG
ACTGACTGAGAAGCACTTCACCAAATGTTCAGCATCCTCACCCATCAGGA
AAATGCAAATCAAAATAACCCTGAGCTTCTACCTCACACCATTCAGAATG
GCTAAGATAAAAAATTCAGGTGACAGCAAATGCATGATAGGATATGGAGA
AAGAGGAACACTCGTCCATTGTTGGTGGGATTGCTAGCTTGTACAACTAC
TCTGGATATTAATCTGTCAGTTCCTCAGAATATTGGATATAGTACTACCT
AAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATTTTCCTAC
TGTTAAGAAGGACACATTCTCTGCTATGTTCATAGCTGTCTTATTTATAA
TAGCCAGAAGCTGGAAAGAAACCAGATGTCCCTCAACAGAGGAATGGATA
TAGTAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTGATGAAATTCTTAGGCAAATGGATGTACCTGGAGGGCATCA
TCCTGAGTGAGGTAACCCAACCGCAATAGAAGGCACATGATATGTACTCA
CTGATAAGTGGATATTATCCCAGAAACTTAGTATACCCAAGATACAAGAT
ACAATTTGCAAAACACATGCAGCTCAAGAAGAACAAAGACCAAAGTGTGG
ACACTTTGCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTA
CAAAGACAAAGTTTGGGGCTGAGACAAAAGAATGGATCATCTATAGACTG
CCATACCTGGGGATCCATCCCATAATCAGCCTCCAAACACTAAAGTACCC
TGATATAGGTGTCTCTTGTGAGACTATGCTGAGGCCTGGCAAACACAGAA
GGGGATGCTCACCGTCATCTATAGCATGAAACAAAGGGCCCCCAATGGAG
GAGCTTGAATATTCACCAAGGAGCTCAAGGGTCCGCAATCTTATGGGGGG
AATAGCAATATTAACTTAACGGTACCCCCAAACCTCTGTCCCCTACTGGC
AATGTATCAAAAGAGGGCCTATTTGGCCTTCCTGGGAAAGAAAGCCCCTT
GGCCTTGCAAATTTATATGCCCCTTTTTGGGGAAATCCCCCGCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_i17.b1 MSMg01no062_i17.b1 CHROMAT_FILE:
MSMg01no062_i17.b1 PHD_FILE: MSMg01no062_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:15 2005
         (771 letters)



>mm_chr3_13155912_13157080
          Length = 1169

 Score =  905 bits (468), Expect = 0.0
 Identities = 506/520 (97%), Gaps = 6/520 (1%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcatgtttttcacatttcccat--tgggcaaaaccttattttaatgataacttatt 73
           |||||||||||||||||||||  |||   |||||||||||||||||||||||||||||||
Sbjct: 516 gaattcatgtttttcacattt--cataaagggcaaaaccttattttaatgataacttatt 459

                                                                       
Query: 74  gaagccttgaactatactcatagccaccattttaaacattattaccaccaaaaagataaa 133
           |||| ||||||||||||||||||  |  ||||||||||||||||||||||||||||||||
Sbjct: 458 gaagtcttgaactatactcatag-ta-gattttaaacattattaccaccaaaaagataaa 401

                                                                       
Query: 134 aaggtttctttattattagataggtattcattttttcccatttgattgttagcaatggca 193
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 400 aaggtttctttattattagataggtattaattttttcccatttgattgttagcaatggca 341

                                                                       
Query: 194 tgtcactcaaaagaaaaatcgcattagaaaagtagaaatagacatgctaattagataatt 253
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 340 tgtcactcaaaagaaaaatcgcattagaaaagtagaaatagacatgctaattagataaat 281

                                                                       
Query: 254 tagtttcttatgcaatatatatcaaaatgttctactctgcaccatttatacacaatttca 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tagtttcttatgcaatatatatcaaaatgttctactctgcaccatttatacacaatttca 221

                                                                       
Query: 314 tcaagagaaattttatgctgacaggaatgtgatatggagaggccagatccttacagatac 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tcaagagaaattttatgctgacaggaatgtgatatggagaggccagatccttacagatac 161

                                                                       
Query: 374 agatgtggatgcttgcagacaaacatcagattgaacaggcagatgccattagaggagtta 433
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 160 agatgtggatgcttgcagacaaacatcagattgaacaggcagatgccaatagaggagtta 101

                                                                       
Query: 434 ggggaaagactgaaggagatgaactagtttgcaactcatgcaggtttcaacagagttagg 493
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 100 ggggaaagactgaaggagatgaactagtttgcaactcatgcagatttcaacagagttagg 41

                                                   
Query: 494 ggaaagactacagaagctgaatgggtttgcagccccacag 533
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  ggaaagactacagaagctgaatgggtttgcagccccacag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 1169
Length adjustment: 10
Effective length of query: 761
Effective length of database: 1159
Effective search space:   881999
Effective search space used:   881999
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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