Query= MSMg01no062_i20.b1 MSMg01no062_i20.b1 CHROMAT_FILE:
MSMg01no062_i20.b1 PHD_FILE: MSMg01no062_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:16 2005
(726 letters)
>mm_chr3_149460049_149461164
Length = 1116
Score = 1311 bits (678), Expect = 0.0
Identities = 710/726 (97%), Gaps = 10/726 (1%)
Strand = Plus / Minus
Query: 1 gagaaatctagcagaacaaatcagttatgatccccagttcctagcaatatggccaatgtt 60
||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||||
Sbjct: 916 gagaaatctagcagaacaaatcaattacgatcccaagttcctagcaatatgggcaatgtt 857
Query: 61 aaatgtggtttctatttctctcaaattagttttaggtaaatatacaaataattacttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 aaatgtggtttctatttctctcaaattagttttaggtaaatatacaaataattacttaaa 797
Query: 121 tattcaaaagtatgagatctaccaaggtgatacttaaattaaaaacgtgattttatagag 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 796 tattcaaaagtatgagatctaccaaggtgatac-----ttaaaaacgtgattttatagag 742
Query: 181 ataagatgagatgaaaagtgatttatacatgaaaataaaccataagattttatttttcaa 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ata-----agatgaaaagtgatttatacatgaaaataaaccataagattttatttttcaa 687
Query: 241 attataaattaggaccttaaaatatactagaatttaaaaaactcaatgttgcttgcaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 attataaattaggaccttaaaatatactagaatttaaaaaactcaatgttgcttgcaggg 627
Query: 301 gccctaaattggccttatgtttattttgcacaatagcatattgtgctagtgttgtggcat 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtcctaaattggccttatgtttattttgcacaatagcatattgtgctagtgttgtggcat 567
Query: 361 attatttgcacacagatattcattacagttgctccaggaaacataactggaaacttcttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attatttgcacacagatattcattacagttgctccaggaaacataactggaaacttcttg 507
Query: 421 acttacagattttgaaagcttgcccttaatgttctaatagcataaggttttataattaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acttacagattttgaaagcttgcccttaatgttctaatagcataaggttttataattaat 447
Query: 481 tcccatagtacaaaataaacaaatgagggaaatttctaaaagctctgcaaatttttatac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcccatagtacaaaataaacaaatgagggaaatttctaaaagctctgcaaatttttatac 387
Query: 541 tcataattcagtcataataggttttctctgaatgtgtgatttgaaattcagcatacagaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcataattcagtcataataggttttctctgaatgtgtgatttgaaattcagcatacagaa 327
Query: 601 ttttaattgcatgtcattttgtaaatttgtacttgttgtgataaatgtagctttcacaaa 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 326 ttttaattgcatgtcattttgtaaatttgtacttgttgtaataaatgtagctttcacaaa 267
Query: 661 cttttccctgtcctagaatttggtacctgaagtaaggacaaattccacaatttaaatggt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttttccctgtcctagaatttggtacctgaagtaaggacaaattccacaatttaaatggt 207
Query: 721 tagaat 726
||||||
Sbjct: 206 tagaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 1116
Length adjustment: 10
Effective length of query: 716
Effective length of database: 1106
Effective search space: 791896
Effective search space used: 791896
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_i20.g1 MSMg01no062_i20.g1 CHROMAT_FILE:
MSMg01no062_i20.g1 PHD_FILE: MSMg01no062_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:16 2005
(751 letters)
>mm_chr3_149339771_149340921
Length = 1151
Score = 1363 bits (705), Expect = 0.0
Identities = 740/755 (98%), Gaps = 10/755 (1%)
Strand = Plus / Plus
Query: 1 tacaaaatgggtacacttactaccaca--c--cctttaaccatttcctcttcctcttctt 56
||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 201 tacaaaatgggtacacttactaccacattcttcct----ccatttcctcttcctcttctt 256
Query: 57 cttccttatctttttcaactccactcccacattggactcttctatgtaagctgcatgaca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cttccttatctttttcaactccactcccacattggactcttctatgtaagctgcatgaca 316
Query: 117 catctttgggacaacgatgtgtatcaatcttctatctaagttgctgggcacatccttggg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 catctttgggacaacgatgtgtatcaatcttctatctaagttgctgggcacatccttggg 376
Query: 177 acaatggagtgttgcggttgaatacaaatgacttcattagctttaactgtcaatttgaca 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acaatggagtgttgtggttgaatacaaatgacttcattagctttaactgtcaatttgaca 436
Query: 237 caatgtagaattttctgggaagagaattttgattgaggaaatacctagatcaaattggtc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caatgtagaattttctgggaagagaattttgattgaggaaatacctagatcaaattggtc 496
Query: 297 tgtgggctttctgagtattattctcttgattcttaattgatatactaaactacactatgg 356
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgtgggctttctgaggaggattctcttgattcttaattgatatactaaactacactatgg 556
Query: 357 ctggcactatatcctaagtaggtggtcttgaactatataaaaaaaatgtagctaaggaaa 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 557 ctggcactatatcctaagtaggtggtcttgaactatataaaaaaa-tgtagctaaggaaa 615
Query: 417 agcttgccttcctgccagcaaccagcatccttcatgcttcctgccagcagccagcatcct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agcttgccttcctgccagcaaccagcatccttcatgcttcctgccagcagccagcatcct 675
Query: 477 ccatgcttcctgccacttctttggctgtcaaatgagttctttggtcagtgatgatgcttt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ccatgcttcctgccacttctttggctgtcaaatgagttctttggtcagtgatgatgcttt 735
Query: 537 atggaatatcaagcaaatctgcatccaaatacctgccttgagttcccatcttgtctgtgc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atggaatatcaagcaaatctgcatccaaatacctgccttgagttcccatcttgtctgtgc 795
Query: 597 tcaatgatggactgtgatctagaattaaaagtcaaataaactctttcattctctaagctg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tcaatgatggactgtgatctagaattaaaagtcaaataaactctttcattctctaagctg 855
Query: 657 atttggtaagagccttttatcctagtatcaggaaggaggctaacacaaaaggtctgcaat 716
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 856 atttggtaagagcgttttatcctagtatcaggaaggaggctaacacaaa-ggtctgcaat 914
Query: 717 tttctcttcagagctataaatatctagcggaagaa 751
|||||||||||||||||||||||||||||||||||
Sbjct: 915 tttctcttcagagctataaatatctagcggaagaa 949
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 751
Length of database: 1151
Length adjustment: 10
Effective length of query: 741
Effective length of database: 1141
Effective search space: 845481
Effective search space used: 845481
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
