BAC Information

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BAC

Clone NameMSMg01-062M21
Chromosome3 (Build37)
Map Location 77,716,257 - 77,716,982
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062M21.T7 (MSMg01no062_m21.b1)MSMg01-062M21.TJ (MSMg01no062_m21.g1)
ACCAG288693AG288694
length1,1021,165
length of high quality
(start - end)		717 (87 - 803)795 (84 - 878)
definitionCHROMAT_FILE: MSMg01no062_m21.b1 PHD_FILE: MSMg01no062_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:47 2005CHROMAT_FILE: MSMg01no062_m21.g1 PHD_FILE: MSMg01no062_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCATTTTTTNNTTAGCAGTGCGCGCTAACGACTCCTAAGGGAGAGGAT
CCGCGGAATTCTTCTTTGTCATTCTTCCCTTGAATAGTATTTGCATTTTT
AGTTTGATATTAACCACATCTCCGTGGATCTGCACCCCATATATCACAGG
AATCACCTGCTTTGAATGTAGACAATTGTACTAATATCATATCAAATAAA
ATATCAAATTCATCATAGCAAGAATCTCCTTGTTCTTGTTCCTTCTATTC
AACTGCACATTCTCCCTCACTAACACAAGGAAGCCAATGCCTCAGATCTG
TCACTGTGGTTTTAGATGTTTCTGTCCTGTAAAACTACATGTCATTCAGA
AAGAAGACCTCATTTAACCTGGAATTGCACTCAGTGCTGCTTTCTAAAAG
GACTATTTTTATTGTAGCTTTTGTTTTCACTACTGCTGAGGGCAATTACC
TACTGATAAATCTATTAAACTTTCTGTTTTATTTTTTCCTTAGCTGAAAT
TCATCCAATGGATGAAGTCCAGGGTTCTATTGTTGTTGTTATCATTTGTT
TGCTTGTTTCTGCCTTGGGTTGGGGTTGGATATAAAAGTGAAGAAAGAGA
ATTTTTGTTTTTTTGTTCCATGGTACTATTTAATTGGTGATAGATCTCTG
AAGCAGAGGGTATATAGACACAGACACACAGACACACAGACACACACAGA
CACACACACTGAGAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGACTGTTTAGATCTATAACATTTGTCCACTACCTGTGAC
TGTCCCTGACCTACTGTCCTATTTTTTATTGTTTTTATGTTCTTTCTGTG
NAGAACAGAACTGGGATATCTAAATCTAACCAAATGTTTAAATGAAAGTG
GTCTGTCTCTGAATTATCCTTCAATAAACCTAATGTTACTAATTTAAATA
TCCTTTTCTTAAAATCTTTTCTATTTTTCTCTGTTTTATTTTTATTCTCA
TTTCCCTCCCCCTTTTTTTCATTGGTATTCTTTCTTTTATCATTCGTTCT
TTTCCTTCTTTATTTTTTATAATATAATCTTTTTTCCTTCTCTTTTAATA
AT

NNCCCGATTTTTNTTTTAACATGTGAGGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGGAATGAAAAG
CTGAAGGTGTTTTCAACCCCCTAGGAAGAGCAATATCCCCCAACCAGATG
CTCCAGGGTCCCAAGGACTAGACCATCAACCAAAGAGTATACATGGACCC
TGAGTGCCATTAGAAAAAATGTAAACAGGCAACCTTAGCAAATAGGAGGT
TGGAGGGACCCCTCCCCCCAGAATGCACCAGAGACCTGGGAGGTAAGAGA
CTCCCAGGACTCAAAGGGAGGGGCATTAGATGAAATGCCTGACAGTAGGG
AGAGGGAACTTATAGAGCCCATCTCTAGCAGGAAGACAGGAGAACATCAA
ATCAGGGATGGGGCTGCCATCCCACAGTCACATCTCTGACCCATAATAGT
TCCTGTCTGAAAGAATTACAGAGATGGAAATGGATAGGAACTTGAGGAAT
AGAAGGTCTAGCAACAGGTCCAAAGTGGGAGCCAACTCATAGGGAGGTTC
CAAGGCCTGACGCTATTACTGAGGCTATGGAGCATTCACAAAAAAAAAGG
ATATATCATAACTACCTTCTGAAAGACCCAACAAGCAGCAGAAGGAACCA
GATGCAGATATTTGCACCAATCAATGGACAGAAGCAGCTGAATCCTGTTG
TTGAATTAGGAAAGGCTGAAAGAAGCTGAAGAAAAGGGCAATCCTGTAGG
AGGACCAGCAGGCTCAATTCATCTGGACCCTGAGATCTCTCANACACTGG
AACACTAAACAGACAGCATACACCAGCTGATATGAGGCTCCCAACACACA
TAGGGTATAGGACTTCTGGGTCTGTGTTCATTCAGAGATGATGTACCTAA
TCTTTTAAGACTGGAGTTCCTAAGGTGTTTGGAGGTCAGGTGGTTTTGTT
AAGTTNNTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTNNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTCTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTNTTTTTTTNNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNTTTTTTCCTTTTCTTNTCTNTTTCTTTCTCTTCT
CTCTTTTCTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_m21.b1 MSMg01no062_m21.b1 CHROMAT_FILE:
MSMg01no062_m21.b1 PHD_FILE: MSMg01no062_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:47 2005
         (717 letters)



>mm_chr3_77716205_77717318
          Length = 1114

 Score = 1239 bits (641), Expect = 0.0
 Identities = 701/729 (96%), Gaps = 15/729 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatttgcatttttagtttgatattaaccacatctccgtggatctgcaccccatatatca 60
           |||||||||||||||||||||||||||||| ||||||||||||||| |   |||||||||
Sbjct: 778 gtatttgcatttttagtttgatattaaccagatctccgtggatctgtagttcatatatca 719

                                                                       
Query: 61  caggaatcacctgctttgaatgtagacaattgtactaatatcatatcaaataaaatatca 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 718 caggaatcacctgctttgaatgtagacaattgtactaacatcatatcaaataaaatatca 659

                                                                       
Query: 121 aattcatcatagcaagaatctccttgttcttgttccttctattcaactgcacattctccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 658 aattcatcatagcaagaatctccttgttcttgttccttctattcaactgcacattcttcc 599

                                                                       
Query: 181 tcactaacacaaggaagccaatgcctcagatctgtcactgtggttttagatgtttctgtc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcaataacacaaggaagccaatgcctcagatctgtcactgtggttttagatgtttctgtc 539

                                                                       
Query: 241 ctgtaaaactacatgtcattcagaaagaagacctcatttaacctggaattgcactcagtg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctgtaaaattacatgtcattcagaaagaagacctcatttaacctggaattgcactcagtg 479

                                                                       
Query: 301 ctgctttctaaaaggactatttttattgtagcttttgttttcactactgctgagggcaat 360
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 478 ctgctttctaaaaggactatttttattgtagtttttgttttcagtactgctgagggcaat 419

                                                                       
Query: 361 tacctactgataaatctattaaactttctgttttattttttccttagctgaaattcatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacctactgataaatctattaaactttctgttttattttttccttagctgaaattcatcc 359

                                                                       
Query: 421 aatggatgaagtccagggttctattgttgttgttatcatttgtttgcttgtttctgcctt 480
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 358 aatggatgaagtccagggttctattgttgtt---atcatttgtttgcttgtttctgcctt 302

                                                                       
Query: 481 gggttggggttggatataaaagtgaagaaagagaatttttgtttttttgttccatggtac 540
           ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 301 gggttggggttggatataaaagtgaagaacgagaatttttggttttttgttccatggtac 242

                                                                       
Query: 541 tatttaattggtgatagatctctgaagcagagggtatatagacacagacacacagacaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatttaattggtgatagatctctgaagcagagggtatatagacacagacacacagacaca 182

                                                                       
Query: 601 cagacacacacagacaca--------cacactgagagagagaacagaga----gagagag 648
           ||||||||||||||||||        |||||||||||||||||||||||    |||||||
Sbjct: 181 cagacacacacagacacatagacacacacactgagagagagaacagagaaagagagagag 122

                                                                       
Query: 649 agagagagagagagagagagagagagagactgtttagatctataacatttgtccactacc 708
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agagagagagagagagagagagagagagactgtttagatctataacatttgtccactacc 62

                    
Query: 709 tgtgactgt 717
           |||||||||
Sbjct: 61  tgtgactgt 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1114
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1104
Effective search space:   780528
Effective search space used:   780528
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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