BAC Information

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BAC

Clone NameMSMg01-062M24
Chromosome3 (Build37)
Map Location 39,952,079 - 39,952,563
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062M24.T7 (MSMg01no062_m24.b1)MSMg01-062M24.TJ (MSMg01no062_m24.g1)
ACCAG288699AG288700
length1,1461,200
length of high quality
(start - end)
585 (117 - 701)582 (121 - 702)
definitionCHROMAT_FILE: MSMg01no062_m24.b1 PHD_FILE: MSMg01no062_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:47 2005CHROMAT_FILE: MSMg01no062_m24.g1 PHD_FILE: MSMg01no062_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCTTNTNNAATCATTGGCGCTAAGACTACTAAGGGAGAGGATCCGCGG
AATTCAGAAAGAGCAAACGCCTTTAAGTACCTTTTCATATCTTGTGCTTT
CTGATGTCCCTTTTACTGTGAACCCTCTCATTATTAGGTGATGCTTCCTT
GTCTCCTTTGATCTCATTTCTTTTTTTAAAAAAATTTTCATTCGATATTT
TCTTCATTTACATTTCAAATGCTATCCTAAAAGTCCCCTATACCCTCCCC
CCAGCCCTGCTCCCCTACCCACTCATTCCCATTTCTTGGCCCGGGCATTC
CCCTATACTGAGACATATAAAGTTTGCTAGACCAAGGGGCCTCTCCTCCC
AGTGATGGCCGACTAGGCCATCTTCTGCTACATATGCATCTATAGACATG
AGCTCTGCGGGTACTGGTTAGTTCATATTGTTGTTCCACTTATAGGGTTG
CAGACCCCTTCAGCTCTTGGGTGCTTTCTCTAGCTCCTATATTGGAGGCC
CTGTGTTCCATCGAATAGATGACTGTGAGCATCCACTTCTGTATTTGCCA
GGCACTGGCAAAGCCTCACAAGAGACAGCTATATCAGGGTCCCTTCAGCA
AAATCTTGCTAGTGTATGCAATAGTGTCTGCATTTGGTGGCTGATTATGG
GATGGACCCCCAGATGGGGCAGTCTCTGGATGGTCCATCCTTTCATCTTA
GCTCCAAACTTTTGTCTCTGCAACTCCTTCTATGGTTATTTTATTCCCTA
TTCTGGAGGAATGAATTATCCATTCGTTGGTCTTTTCTTCTTGGTTTTCT
TGTGTTTTGTAAGTTGTACCTTTGGTTTTTCTAGATTTCTTGATTAATAT
TTCCTTTATTATGGAGTATTTATTCAGGTGACTTTTTTTTGTTATTTGGT
ATATTTCTTCTTACTAAGTTATTTTTCTAAATTATTTCCATTTGTTTCAA
TAAATTTTCAAATAATTCTTTGTTTTTTTAATAATAGGATCTATAACTTT
CATTGTTTTAATTTGTTTCTCATTTTTTTTTGTATTTCATCTTTTTTTTT
TTGATATTTACTCTTTGTTTTTTTTTTTTCTATTCTTCTTTTCTTTTTTT
ATATTACTATTGTCCTCTTTATTCTATTATCATTCCTTTTATTTCG
TCCCACTNTTTACCTCATTGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCATTTAGTATCTTCCTGGACCCTCA
ATCCTATGTTGCTGCCCTTCCAGAGAACCCGCAGCCAGCTAGCTGAGCAG
GTGGCATGCTTCATAGTGGAGGAGAAAACCATAGGTTCTTTACAACTTCC
TCAATTCCCCAGTTATTCTCTCTTAGTATGCAGACTTTTCTTTTAATATC
TGGAATATCCACATACCCTTGAAATGTTAGGATAGGAGTTTGTTTTCATT
TTTCTGTTCATATTTGAATATTCCCTTTCCTGGAAAAAGGAGACATTGTC
ACATAATACTAAAGGTTAATAATACTAAGGGCATGTATATGAAGAGTATA
TTGAAGATCAATCAATCAATGGTAAATCTATATGAGTGAAAAGTATTTCA
ACCTTAACCAATGCAATTTCCCTAGCACAAACATAAATGCTTACAGACAA
AAAAGGAGGGGACGATGGAAGAGAAAAGAGAGGAAGAGAAAGACAAAAAG
GAGAAGCGCGATGATGGGATCTAATGGAAAATTGAGTGACTCGTTGATTT
CAAATGTTTTTTGACATGTTGCACACCACAGGGCCAGAGTAGTTGACAGA
ATAAAGTCTTTTGACTTTTATTTCATTGTACAGTATTCACATTTTCCCCA
TAATATACACTTGATCATTGATTAGACTAAATTGTACTAAAAATGATATC
TAGGTAAAACCTTCTTCATAAAATTTAAAGTTTGTTCATCTGAAAAATAT
AAATACCTTTGAATAGAACAATTTAAACCCCAATAATTAAATTCTACTAG
TCAGTATCCCACTTCTGGAAACCTCAAAGAGATAAAACGGTTGTTTTCCA
GGAAATCTCACCCCACCAGGTTTTTAATATTTTTCCTTTTGGTCCCCCTT
TTTCTCCCCCAAACATTGTTCTTCCAATTTCTTACCAAAAAGTCCTTTGG
ATTTTCCCTGGCTTCCTTTACCTTTTTTTCCAAAAACAGCAACAATTTCT
TCCCTCTTTTGGTTGACCTTTGAACGTAAGTTATCTTCCTCCGTAATTCA
CCCTATAGTTCCCCTTTTTTCTCCTACAGTCTTCTTTCCCTCGAAAATCT
CCCCTTTAATTCCTTTTCCTCCCTTACACCACGCTCTATATAATTTATAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_m24.g1 MSMg01no062_m24.g1 CHROMAT_FILE:
MSMg01no062_m24.g1 PHD_FILE: MSMg01no062_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:48 2005
         (582 letters)



>mm_chr3_39951786_39952763
          Length = 978

 Score =  845 bits (437), Expect = 0.0
 Identities = 475/489 (97%), Gaps = 4/489 (0%)
 Strand = Plus / Plus

                                                                       
Query: 94  tattctctcttagtatgcagacttttcttttaatatctggaatatccacatacccttgaa 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tattctctcttagtatgcagacttttcttttaatatctggaatatccacatacccttgaa 353

                                                                       
Query: 154 atgttaggataggagtttgttttcatttttctgttcatatttgaatattccctttcctgg 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atgttaggataggagtttgttttcatttttctgttcatatttgaatattccctttcctgg 413

                                                                       
Query: 214 aaaaaggagacattgtcacataatactaaaggttaataatactaagggcatgtatatgaa 273
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 414 aaaaaggagacattgtcacataatactaaaggttaataatgctaagggcatgtatatgaa 473

                                                                       
Query: 274 gagtatattgaagatcaatcaatcaatggtaaatctatatgagtgaaaagtatttcaacc 333
           |||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||
Sbjct: 474 gagtatattgaagatcaatcaa-c---ggtaaatctatatgagtgaaaagtatttcaacc 529

                                                                       
Query: 334 ttaaccaatgcaatttccctagcacaaacataaatgcttacagacaaaaaaggaggggac 393
           ||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||| 
Sbjct: 530 ttaaccaatgcaatttccctagcacaaacataaacacttacagacaaaaaagaaggggag 589

                                                                       
Query: 394 gatggaagagaaaagagaggaagagaaagacaaaaaggagaagcgcgatgatgggatcta 453
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 590 gatggaagagaaaagagaggaagagaaagacaaaaaggagaagcgccatgattggatcta 649

                                                                       
Query: 454 atggaaaattgagtgactcgttgatttcaaatgttttttgacatgttgcacaccacaggg 513
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 650 atggagaattgagtgactcgttgatttcaaatggtttttgacatgttgcacaccacaggg 709

                                                                       
Query: 514 ccagagtagttgacagaataaagtcttttgacttttatttcattgtacagtattcacatt 573
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ccagagtaattgacagaataaagtcttttgacttttatttcattgtacagtattcacatt 769

                    
Query: 574 ttccccata 582
           |||||||||
Sbjct: 770 ttccccata 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 978
Length adjustment: 10
Effective length of query: 572
Effective length of database: 968
Effective search space:   553696
Effective search space used:   553696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)