Query= MSMg01no062_n04.b1 MSMg01no062_n04.b1 CHROMAT_FILE:
MSMg01no062_n04.b1 PHD_FILE: MSMg01no062_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:49 2005
(766 letters)
>mm_chr3_140078127_140079292
Length = 1166
Score = 1427 bits (738), Expect = 0.0
Identities = 759/766 (99%)
Strand = Plus / Minus
Query: 1 ctttctattccttcactgtgatattctattcttctacttgttatatatttaccctttctg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 966 ctttctattccttcactgtgatattctatttttctacttgttatatatttaccctttgtg 907
Query: 61 agtggaataagtcagaggataccaatgcagcagtaattcacaagaaaaaacatgacatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 agtggaataagtcagaggataccaatgcagcagtaattcacaagaaaaaacatgacatga 847
Query: 121 aaaatgttggtagtttaacaaaggatgttttacacctataaggatatctgtacaggaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 aaaatgttggtagtttaacaaaggatgttttacacctataaggatatctgtacaggaggg 787
Query: 181 aaacaaataagcatttgtactatgttgccatggctgatgacagtagctgtccaggaacta 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 786 aaacaaataagcatttgtactatgttaccatggctgatgacagtagctgtccaggaacta 727
Query: 241 aacatggcagaataagcagcaagggtgtattgactgaacagctggatcttggggctatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aacatggcagaataagcagcaagggtgtattgactgaacagctggatcttggggctatac 667
Query: 301 tagagaaccagccatggtgatgctctgaggcaagaggacagacatgctagaatatgaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 666 tagagaaccagccatggtgatgctctgaggcaagaggacagacatgctagaatgtgaatg 607
Query: 361 agataacaactttttatcatactgaaatacccccttcttgaagattttaatgaaagaata 420
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 606 agataacaactttttatcatactgaaaaacccccttcttgaagattttaatgaaaggata 547
Query: 421 gaatgtaaggtaggaaggggacttagtgacataacacagaaagccaaatattggcgaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatgtaaggtaggaaggggacttagtgacataacacagaaagccaaatattggcgaaaa 487
Query: 481 gtgaatgacaaagaccagcagggaagcaatctccagacccagggcaaaatcattgacata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtgaatgacaaagaccagcagggaagcaatctccagacccagggcaaaatcattgacata 427
Query: 541 gagggtagagtaacaaaaggaacaaattaagctcatctgaacaggaggaaataggttggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gagggtagagtaacaaaaggaacaaattaagctcatctgaacaggaggaaataggttggt 367
Query: 601 ttgctgggaaaagaatatgaacttaacagaaattttacattaaaaagagattgcattcat 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 366 ttgctgggaaaagaatatgaacttaacagaaattttatattaaaaagagattgcattcat 307
Query: 661 gatatgaaaagaagtccaaactaagaaagagggtgaaatttgtataaccccatcaagtat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gatatgaaaagaagtccaaactaagaaagagggtgaaatttgtataaccccatcaagtat 247
Query: 721 aagtaggctttgaattgctatgaggggtgaaaacagcagtaaaaaa 766
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagtaggctttgaattgctatgaggggtgaaaacagcagtaaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 766
Length of database: 1166
Length adjustment: 10
Effective length of query: 756
Effective length of database: 1156
Effective search space: 873936
Effective search space used: 873936
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_n04.g1 MSMg01no062_n04.g1 CHROMAT_FILE:
MSMg01no062_n04.g1 PHD_FILE: MSMg01no062_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:49 2005
(806 letters)
>mm_chr3_139968794_139969999
Length = 1206
Score = 1437 bits (743), Expect = 0.0
Identities = 791/807 (98%), Gaps = 2/807 (0%)
Strand = Plus / Plus
Query: 1 agctctaaacctcatttttaaatggggtcatttgaatttctggagcccagcttattgagc 60
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 201 agctctaaacctcatttttaaatggggttatttgaatttctggagtccagcttattgagc 260
Query: 61 tctttgtatatattggatattagacccctatcagatttaggattggtaaaaacttctttc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttttatatattggatattagacccctatcagatttaggattggtaaaaacttctttc 320
Query: 121 ccagtctgttggtggccttttggtcttattgagagtgtcttttgccttagagaagctttg 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagtctgttggtggcctttttgtcttattgagagtgtcttttgccttagagaagctttg 380
Query: 181 caattttatgaggtcccatttgccaattcttgatcttacagcacaagccattgttgttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caattttatgaggtcccatttgccaattcttgatcttacagcacaagccattgttgttct 440
Query: 241 gtttaggaatttttctcctgtgcccatatcttcgaggcttttccctactttctcctctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttaggaatttttctcctgtgcccatatcttcgaggcttttccctactttctcctctat 500
Query: 301 taatttcagtgtctctggtcttatgtggaggtattttatccactattctcaacaataaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatttcagtgtctctggtcttatgtggaggtattttatccactattctcaacaataaaa 560
Query: 361 gattctctggtggaatcaccatgcctgacattaagctatactacagagcaattgtgataa 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 gattctctggtggaatcaccatgcctgacattaagctgtactacagagcaattgtgataa 620
Query: 421 aaactgcatggtactggtacagtgacagacaga-tagatcaatggaatagaactgaagac 479
||||||||||||||||||| ||||||||||| | |||| |||||||| |||| |||||||
Sbjct: 621 aaactgcatggtactggtatagtgacagaca-agtagaccaatggaacagaattgaagac 679
Query: 480 ccagaaatgaatcaacacacctatggtcacttgatctttgacaagggagctaaaaccatc 539
||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccagagatgaacccacacacctatggtcacttgatctttgacaagggagctaaaaccatc 739
Query: 540 ccgtggaaaaaagacagcattttcaacaaatggtgctggcacaagtggcggttatcatct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccgtggaaaaaagacagcattttcaacaaatggtgctggcacaagtggcggttatcatct 799
Query: 600 agaagaatgataattgatccattcgtatctccttgtacaaagctcaagtataagtggatc 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 800 agaagaatgataattgatccattcttatctccttgtacaaagctcaagtataagtggatc 859
Query: 660 aaagagtgtattagattcttaatgatttccttaatacactgattttactcacaattaaat 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aaagagtgtattagattcttaatgatttccttaatacactgattttactcacaattaaat 919
Query: 720 cctcagatattcaagtcatattatgcttagaacatatttctatattgtcttgaatatatt 779
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 920 cctcagatattcaagtcatattatgcttagaacatatttctatattgtcttgtatatatt 979
Query: 780 tgagtagtgtatcttgaatcattcgtg 806
|||||||||||||||||||||||||||
Sbjct: 980 tgagtagtgtatcttgaatcattcgtg 1006
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 806
Length of database: 1206
Length adjustment: 10
Effective length of query: 796
Effective length of database: 1196
Effective search space: 952016
Effective search space used: 952016
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
