BAC Information

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BAC

Clone NameMSMg01-063B06
Chromosome3 (Build37)
Map Location 124,398,151 - 124,398,442
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B06.T7 (MSMg01no063_b06.b1)MSMg01-063B06.TJ (MSMg01no063_b06.g1)
ACCAG288902AG288903
length681682
length of high quality
(start - end)		626 (44 - 669)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no063_b06.b1 PHD_FILE: MSMg01no063_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:17 2005CHROMAT_FILE: MSMg01no063_b06.g1 PHD_FILE: MSMg01no063_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGTTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGACCCATTTGTCAATTCTCGATCTTATAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGCGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTAAAAGGAGATAAGTATGGATCGATTCACATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTTGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTTTTCAATTCTGTTCCACTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTCATCACAATTGCTCT
GTAGTAAAGCTTTAGGTCAGGCATGGTGATA

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTACTATGTTAAACTGTTACCTA
GAGCCATGCTTTTCCACATTAATTAGCCCATGTGCCAATGTCATTAGTGA
TTTTGCAATACATGTAACATTTAACAGCGTTTTGTTTACTTAATAGAAAG
CAAAATGAATCAATTAATATTAATTCTATTGTGCTAATACTATGTCTTCA
GTAATAACAAAAAATTAAAGATCGAGCTCTATTTTTGTAAATCACATCCA
TCCCATGGTGTTTGTAAATGCAAAAAGAAAATAGCTATTTTCACAATCAT
TTTATTTCTGAGATGAGCAAATCAAACACTTCTAGTCGTGGTGTTTTTTC
TCTCTCGTTTTTTTAAATTAAATATTTTCCTTATTTACATTTCAAATGTT
ATCTCCTTTCCCAGTAAACCCCCCAACCCCCAGAACTCCCTATTCCATCT
CCTCTTCTCATACTTCTATGAAGGTGTTCATCTACCTACACATCCACTCT
TGCCCCCATGCCCTAGCATTTCCCTGCACTGGGGCATTGAGCCTTCACAG
GACTAAGGATGTTGAACATTCCCTTAGGTGCTTCTTGGCCATTTGAGTGT
CCTTAGTTGAGAAGTCTCTGTTTAGCTGTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b06.g1 MSMg01no063_b06.g1 CHROMAT_FILE:
MSMg01no063_b06.g1 PHD_FILE: MSMg01no063_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:17 2005
         (292 letters)



>mm_chr3_124397951_124398642
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttactatgttaaactgttacctagagccatgcttttccacattaattagcccatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttactatgttaaactgttacctagagccatgcttttccacattaattagcccatgtg 260

                                                                       
Query: 61  ccaatgtcattagtgattttgcaatacatgtaacatttaacagcgttttgtttacttaat 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ccaatgtcattagtgattttgcaatacatgtaacatttaacagagttttgtttacttaat 320

                                                                       
Query: 121 agaaagcaaaatgaatcaattaatattaattctattgtgctaatactatgtcttcagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaagcaaaatgaatcaattaatattaattctattgtgctaatactatgtcttcagtaa 380

                                                                       
Query: 181 taacaaaaaattaaagatcgagctctatttttgtaaatcacatccatcccatggtgtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacaaaaaattaaagatcgagctctatttttgtaaatcacatccatcccatggtgtttg 440

                                                               
Query: 241 taaatgcaaaaagaaaatagctattttcacaatcattttatttctgagatga 292
           |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 taaatgcaaaaagaaaatagctattttcacaaacattttatttctgagatga 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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