BAC Information

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BAC

Clone NameMSMg01-063C14
Chromosome3 (Build37)
Map Location 59,451,088 - 59,451,359
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732
Downstream geneLOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063C14.T7 (MSMg01no063_c14.b1)MSMg01-063C14.TJ (MSMg01no063_c14.g1)
ACCAG288966AG288967
length762765
length of high quality
(start - end)
420 (112 - 531)271 (140 - 410)
definitionCHROMAT_FILE: MSMg01no063_c14.b1 PHD_FILE: MSMg01no063_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:25 2005CHROMAT_FILE: MSMg01no063_c14.g1 PHD_FILE: MSMg01no063_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTTNTTTTNTTTNNNNNCNTCNCTCCCCNCCCCCCCA
CCCCTCCCACATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCACTCTATTCGCCTATAAAAACCAGAAGATCCT
GGGCAGATGTCATACAGACTCTAAGAGAACACAATTGCCAGCCCAGGCTA
CTATACCCAGCAAAACCCTCAATTACCGTAGATGGAGAAACCAAGATATT
ACATAAAAAAACAAATTTACACAATATCTTTCCACAAACCCAGCCCTTCA
AAGGATAAAATGGAAAAATCCACAAAAGAAGAGAAACTACACCCTAGGAA
ATGCAAGAAAATAATCTTTTAACAAAGAAAAAAAGATAGCCACATAAACA
TAATTCCACCTCTAACAACAAAAATAACAAGAAGCAATAATTGAATTCCT
TAATATCTCTTAATAACAATGGACTCAATTCCCCAATAAAAAGATAGAGA
GACTGGATACATAAACAGGACCCAACATTTTGCTGCCTACAGGAAACACA
CCTCAGTGACAAACACAAACACTACATCAGAGTAAAAGGCTAGAAAACAA
TTCTCCAAGCAAATGGCCTACAGAAACAAGCTGGACTAGACTTCCTAATA
TTTGAACATAATACACTTCTAACCCCAAGCTATCAGAAATGATAAGGAAG
GATAAATTCTCTATTCCTCACACGATAAACCTACTAACAACAACGCTCAA
ACCCTGAACACG
NNNNNNNNNNNNNNNNNNNNNNNTTTTNCCCCCNNNNNNNCNNNCCTTTT
TCTTTTTTNCATTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTCTTCT
GCTTTTGGTACTCTGAGTTTGAGTTTGTTGTTTCCCTGATAAATTTAATG
TTTAGTATTTTCTTATTTTATCTAGTCTCATATGTTTGCTGATTGTTATG
AGCTTACATTGTCCTTTTCACCTCTTCTTAGAGACTTTCATCGGAGGCAT
TTGTTTCTTTCAGATTTGTGTGTATGTGGAACAGTGCCATTTCTTGCTCC
TGGTCTCCTTCACTCACATTGACAACTCTTATCCATCTAATTAACTTTAT
CTTCCAAAAGTATTGGAAAGGTTATATATTGCCAGGCCACTTGGACAAAT
AAAAGCTTATCACACTTTTATCAGAAACCCCCTTAATTAAGTTGAATTCT
TTAAAGGTATGAAAGAAAAAGCCATGTAAACATTGTTAAAGGAAAAATTA
AAATAAACCATTGTACCATCACCTTAAATAAACATTATTGTATATGTGTT
AGTTTCTCGTCGCTTGAGACAATTCTAATACTATTTTTGGATCGTGAATC
TTTACCTTATAACATGGTTATCCCCCTCCATTTTTCTACGGGTCGGACTA
TTTTTTTTCTTCCACATTCACTTCCCCTATTGCTTTTTACCCCTCCTACC
ATGTTAAAATTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_c14.g1 MSMg01no063_c14.g1 CHROMAT_FILE:
MSMg01no063_c14.g1 PHD_FILE: MSMg01no063_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:25 2005
         (271 letters)



>mm_chr3_59450888_59451559
          Length = 672

 Score =  472 bits (244), Expect = e-137
 Identities = 265/272 (97%), Gaps = 1/272 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcctcttctgcttttggtactct-gagtttgagtttgttgtttccctgataaatttaa 59
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcctcttctgcttttggtactcttgagtttgagtttgttgtttccctgataaatttaa 260

                                                                       
Query: 60  tgtttagtattttcttattttatctagtctcatatgtttgctgattgttatgagcttaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttagtattttcttattttatctagtctcatatgtttgctgattgttatgagcttaca 320

                                                                       
Query: 120 ttgtccttttcacctcttcttagagactttcatcggaggcatttgtttctttcagatttg 179
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ttgtccttttcacctcttcttagagactttcatcagaggcatttgtttctttcagatttg 380

                                                                       
Query: 180 tgtgtatgtggaacagtgccatttcttgctcctggtctccttcactcacattgacaactc 239
           ||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 381 tgtgtatgtggaagagtgccatttcttgctcctggtctccttcaataacattgacaactc 440

                                           
Query: 240 ttatccatctaattaactttatcttccaaaag 271
           |||||||||||||||||||| ||||| |||||
Sbjct: 441 ttatccatctaattaactttgtcttcgaaaag 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space:   173706
Effective search space used:   173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)