BAC Information

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BAC

Clone NameMSMg01-063O11
Chromosome3 (Build37)
Map Location 133,622,517 - 133,622,828
singlet/doubletsinglet
Overlap geneLOC100039168
Upstream geneGstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205
Downstream geneLOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063O11.T7 (MSMg01no063_o11.b1)MSMg01-063O11.TJ (MSMg01no063_o11.g1)
ACCAG289524AG289525
length692689
length of high quality
(start - end)
318 (40 - 357)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no063_o11.b1 PHD_FILE: MSMg01no063_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:27 2005CHROMAT_FILE: MSMg01no063_o11.g1 PHD_FILE: MSMg01no063_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CCAAAAGGCACGGGTCCGTGTTCTACTGCCCACCACATAGGAGATGCTCA
ATAATCACGAATAAATAATTATTTGGATACAAATAAATATTTGAATAAGT
AATTGAAAATTTTTAAAAAAAGAAAATGAAAATGTTTGTTTTTGTAGTTG
CTATGACAGTGAGCTACACCTTTATCTGGGGTACACATTTTCCTGACAGA
CTAACCTTTTCTGCAAATGTGCATTTAGCTTGAATTTTAGTTAGAAAAAA
GTACCTTATTCCTCCCACTTTTTGTCTCATTTATTGCTGTATCTTCAACT
TCTAGAGGAGAGGAGTATTTCGCGCACAACTGAGCATTAGGTAAATGGTG
TTGAATAAGAGAATAAGTGATAACTGACAGCCTGACTTCCTGTTAGAAAA
TAAGTGTTTAGTGATCTCAACTGAGTTAGATTTCTTTCTACTGTCCCCAC
ATCCATGGTTCTCATCCTTTAGTGCAATGTCTAATGTCACAGAAAAGACT
CCCTCTCCTTCAGCCCCTCCCCCTCCCTCCCCCTTCTTTCCCCTTCTCCT
TTTCCTCTCCCTCCCCCTTTTCTCTTCTTTTTTTCTTCTTTTCCCCCTTC
TCCTCCTTTCTCCGTTTCTTCCCTTTTTCTCCCTTTTTTCCC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTGTAAACCAGGCTGGCCTTGAAC
TCAGAAATCCGCCTGCCTCTGCCTCCTGAGTAGGTTTAACTGTGTTTAAC
ATTCATTCTATACCTAGTTTTTTTCAGGGCTTTTATCATGATGAAGATTA
CCAATAACTTTTCCTGCTACTGAGATAATCATTTGATTTCTGCCTACAAA
CCTATGTTTTGCTATATGTTACTTATTGATTTTGTGTATTGAACTATCTT
AGTTGGAGTTTTACTGCTGTGAACAGACACCAAGACCAAGGCAATTCTTA
TAAGGACAACATTCACCTGGCCCTGGCTTTCAGATTCAGAGATTTAGTCC
AGTATTGTCAAGGTGGGAACATGGCAGCATCCAGACAGGCATGGTGCAGG
AGAAGCTATGTCTTCATCTGCCAGCCTCTAAAAGAAGACTGACTTTCAGG
TAGCTAGGAAGTGGGTCTTAAAGGTCACATGTCCTAATAGTGCCTGCCAC
TTCTTGGGCCAAGAATATACAAGCCATCACATGAACCATCCTTGTGTGCC
TTGAACATAATCTACTATTATAGTGTTTTAAGGAGTTTTCAAATTTGATT
TGCATGTTTTTTTTTGTTTGCTTGTGTTATGTCCCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_o11.b1 MSMg01no063_o11.b1 CHROMAT_FILE:
MSMg01no063_o11.b1 PHD_FILE: MSMg01no063_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:27 2005
         (318 letters)



>mm_chr3_133622311_133623028
          Length = 718

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccaaaaggcacgggtccgtgttctactgcccaccacataggagatgctcaataat 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaaaaggcaggggtccgtgttctactgcccaccacataggagatgctcaataat 266

                                                                       
Query: 67  cacgaataaataattatttggatacaaataaatatttgaataagtaattgaaaattttta 126
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 267 cacgaataaataattatttggatacaaacaaatatttgaataagtaattgaaaatttttt 326

                                                                       
Query: 127 aaaaaagaaaatgaaaatgtttgtttttgtagttgctatgacagtgagctacacctttat 186
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taaaaagaaaatgaaaatgtttgtttttgtagttgctatgacagtgagctacacctttat 386

                                                                       
Query: 187 ctggggtacacattttcctgacagactaaccttttctgcaaatgtgcatttagcttgaat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctggggtacacattttcctgacagactaaccttttctgcaaatgtgcatttagcttgaat 446

                                                                       
Query: 247 tttagttagaaaaaagtaccttattcctcccactttttgtctcatttattgctgtatctt 306
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 tttagttagaaaaaagtaccttattcctcctactttttgtctcatttattgctgtatctt 506

                       
Query: 307 caacttctagag 318
           ||||||||||||
Sbjct: 507 caacttctagag 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)