Query= MSMg01no064_i17.b1 MSMg01no064_i17.b1 CHROMAT_FILE:
MSMg01no064_i17.b1 PHD_FILE: MSMg01no064_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:33 2005
(368 letters)
>mm_chr3_130204952_130205718
Length = 767
Score = 625 bits (323), Expect = 0.0
Identities = 360/377 (95%), Gaps = 10/377 (2%)
Strand = Plus / Plus
Query: 1 ctcacagatgaaaacattggaagaaaggagaataagaagttaagggattgattggcagag 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 192 ctcacagatgaaaacattggaacaaaggagaataagaagttaagggattgattggcagag 251
Query: 61 ggagggaaggaaagctc--cc-------ttttgcaaaacagaataaccagaccgatatag 111
||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 252 ggagggaaggaaagctcctccaagggtgttttgcaaaacagaataaccagaccgatatag 311
Query: 112 ctgaacaaattgtaccatcatgaagcccactttcctgacatttccatttagaagagtgca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctgaacaaattgtaccatcatgaagcccactttcctgacatttccatttagaagagtgca 371
Query: 172 tttataaaaaaaaagaacacagaaatactggctcactagatctagaaaaattgcatatat 231
||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct: 372 tttat-aaaaaaaagaacacagaaatactgactcactagatctagaacaattgcgtatat 430
Query: 232 aatttggaagagcccttttcaaaactcccctgaaatgtgcctattgattcatccactctt 291
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 431 aatttggaagagcccttttcaaaactcccctgaaatgtgcctattgattcgttcactctt 490
Query: 292 ttcctcaactgttcagttactcagcacttacaagtgcccggtcccattgagctctgagat 351
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttcctcaaccgttcagttactcagcacttacaagtgcccggtcccattgagctctgagat 550
Query: 352 gaaagctatgcctgcca 368
|||||||||||||||||
Sbjct: 551 gaaagctatgcctgcca 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space: 272122
Effective search space used: 272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_i17.g1 MSMg01no064_i17.g1 CHROMAT_FILE:
MSMg01no064_i17.g1 PHD_FILE: MSMg01no064_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:33 2005
(625 letters)
>mm_chr3_130295260_130296284
Length = 1025
Score = 953 bits (493), Expect = 0.0
Identities = 556/595 (93%), Gaps = 31/595 (5%)
Strand = Plus / Minus
Query: 1 attatttgataggctcaaaggggagcaggggaagcttataaataaatgatgctgtaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 attatttgataggctcaaaggggagcaggggaagcttataaataaatgatgctgtaaagc 524
Query: 61 gagaaggcttttctatccccggctaagtcggtgaggctagttgagaaagaacattacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gagaaggcttttctatccccggctaagtcggtgaggctagttgagaaagaacattacata 464
Query: 121 agatttcctgatggttgagttgctgacttgagaagcaaccaagagcccagagtctcctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agatttcctgatggttgagttgctgacttgagaagcaaccaagagcccagagtctcctca 404
Query: 181 cgtttccacactcctacatagtttgtcctaactttgccaacgatgtgtggctgtctacga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cgtttccacactcctacatagtttgtcctaactttgccaacgatgtgtggctgtctacga 344
Query: 241 ttactggataagttacaaagtattggagataaaatttcaaaactgccaaagcagtttgga 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttactggataagctacaaagtattggagataaaatttcaaaactgccaaagcagtttgga 284
Query: 301 tgcttcccttattgcattgttatttctgggcttttctttttttcacttctggtaacctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgcttcccttattgcattgttatttctgggcttttctttttttcacttctggtaacctgc 224
Query: 361 acactgggcttacagcattatgt------------tttttttccccccccccctgggcag 408
||||||||||||||||||||||| || |||||||||||
Sbjct: 223 acactgggcttacagcattatgtgcagaggcagcatt------------cccctgggcag 176
Query: 409 tgcacactgcaaa----aaaaa---cggtcttcctgctggaaatgatactattgcttctt 461
|||| | |||| | | | | | |||||||||||||||||||||| ||||||||||
Sbjct: 175 tgcagagtgcagagtgcagagagctccgtcttcctgctggaaatgatacaattgcttctt 116
Query: 462 gctgtttctccttcctagccctgttacccaccagcttgttgctcttggaagtttctttgc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gctgtttctccttcctagccctgttacccaccagcttgttgctcttggaagtttctttgc 56
Query: 522 ttgtccagaggtctgttactcatccgtaggctaccgcatgagttatcaccaaagc 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ttgtccagaggtctgttactcatccgtaggctaccgcatgagttatcaccaaagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
