BAC Information

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BAC

Clone NameMSMg01-064J01
Chromosome3 (Build37)
Map Location 33,762,125 - 33,762,409
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp13, Pex2, EG545512, LOC100041058, Ttc14, Ccdc39
Downstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064J01.T7 (MSMg01no064_j01.b1)MSMg01-064J01.TJ (MSMg01no064_j01.g1)
ACCAG290000AG290001
length1,196726
length of high quality
(start - end)
315 (136 - 450)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no064_j01.b1 PHD_FILE: MSMg01no064_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:36 2005CHROMAT_FILE: MSMg01no064_j01.g1 PHD_FILE: MSMg01no064_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGGCAGTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCCCCACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAACTTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGGTCCTCAGAAAA
TTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TTGTATCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCTTTTTTTCCCCCCCCCCCAGAAAATGTGCTACCTCTACACAAAGGAGA
AGTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAA
CTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCCAACCTAGG
ATTCCCAAGATATAAGATACAATTTGCTAAACACATGAGACTCAAGAAGA
ATGAAGATTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGAACAAA
ACACCCATGGAGGGAGTTACAGAGACCAAGTTTGGAGCTGAGATGAAAGG
ATGGACCCTGTAGAGACTGCCCTATCCCGGGATTCCACCCCATAATCAGC
ATCCAAACGCTGACCCCATTTGCTTACCCCAGCAAGATTTTATCCAAAGG
ACCCCGAAGTACCTGTCCTCTTGTGAGACTATGCCCGGGCCCTAAACAAC
CCCGAAAGGGATCGTTCTACAGTCACCTTAAGGGAAGGATTCACCAGGTC
TTCCCCATGTCATGATTTTAGAGAAAAGCTATCCCCCCGGGAGCTTAAGG
GGAACCTTCCCCCCTCTCTAGGGGGAACCACACTTTTTTGAATTACACCC
CCTTCCCCCGGGAAATTCTTGTATTCCCCCCCCCCTGTTCCTGGTCTCCA
TAAAATAAGGGCCCCTACTTGTCCCTCCATCCTCCTGTTACAAAAA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCTTTCTCGAATATCCATC
TTCACCATGTCACTGTGGAGGTGGCTGTCTCATCTTCACAGGCATGATGG
AAGTTATGTTTCTTCTGCCTAGAGCCCTTATTCCTTTGGGGAATATTGAA
ATCCTATTGCTGAGCACAGTATCGCCCCAACTCTAGCCACATGACCGAAG
CCTGGCACCCCTTTATGCACTTTATGGCCACTAAGATGAACATGAGCTAA
CTGGAGCCCCTCCTTGCTGGAAGGGAGACAAGAGGCTCTTTCCTTTTGTG
TGATTAAATCGTATTTTGAAACCTATTCATGGCCATGTTCTCCAACATAC
ATGGGAATCGCACATACGCAAGGCTACATGCAGAGAGAATCAGAGCACTG
GGAGAAGATGAGACGGAGCACTAGAGGGCCTGGGCATCCCAGACCTTGTT
CTAACAATAAAGCAGACACTCTGAGCTTGTTTTGCTTCCATCCAATTACT
TAGAATTGTGCCTGTCACTTCAAAGCGAAGTCCAGGTCCAGCTTAAATAT
TTTTTCCTGTAAGAGGCCTTTCTGTACTATGTCTGTATAGACCTCAGATT
ACGCATAGAAGGCGTACACAAGTGTTTACCCATTCGCAAGCATCTTTGAT
TCAGCAACATCAGCCAAGTGTGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_j01.g1 MSMg01no064_j01.g1 CHROMAT_FILE:
MSMg01no064_j01.g1 PHD_FILE: MSMg01no064_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:36 2005
         (287 letters)



>mm_chr3_33761925_33762612
          Length = 688

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%), Gaps = 1/285 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctctttctcg-aatatccatcttcaccatgtcactgtggaggtggctgtctcatctt 59
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttctctttctcgaaacatccatcttcaccatgtcactgtggaggtggctgtctcatctt 426

                                                                       
Query: 60  cacaggcatgatggaagttatgtttcttctgcctagagcccttattcctttggggaatat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cacaggcatgatggaagttatgtttcttctgcctagagcccttattcctttggggaatat 366

                                                                       
Query: 120 tgaaatcctattgctgagcacagtatcgccccaactctagccacatgaccgaagcctggc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgaaatcctattgctgagcacagtatcgccccaactctagccacatgaccgaagcctggc 306

                                                                       
Query: 180 acccctttatgcactttatggccactaagatgaacatgagctaactggagcccctccttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acccctttatgcactttatggccactaagatgaacatgagctaactggagcccctccttg 246

                                                        
Query: 240 ctggaagggagacaagaggctctttccttttgtgtgattaaatcg 284
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctggaagggagacaagaggctctttccttttgtgtgattaaatcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)