BAC Information

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BAC

Clone NameMSMg01-064L03
Chromosome3 (Build37)
Map Location 31,960,255 - 31,960,569
singlet/doubletsinglet
Overlap geneKcnmb2
Upstream geneSkil, Cldn11, Slc7a14, LOC625125
Downstream geneLOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L03.T7 (MSMg01no064_l03.b1)MSMg01-064L03.TJ (MSMg01no064_l03.g1)
ACCAG290096AG290097
length1,322728
length of high quality
(start - end)
320 (42 - 361)---
definitionCHROMAT_FILE: MSMg01no064_l03.b1 PHD_FILE: MSMg01no064_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:50 2005CHROMAT_FILE: MSMg01no064_l03.g1 PHD_FILE: MSMg01no064_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGTTGAGTGCTACAGACTTTTTGAGGTGCCCGGGAACATTTCCTTTAG
CGCTTCCCTGGAGCTCTGCTCTTGTCCCCGACACAATTCCGGAGCTACTC
CCATCCAAGCTGGGAGGTGAACCAGGATTGTGAGAGACGATGGAGAAAAC
CTTACTGGAGGGCACTCTTTGCGGGTACCTAGAAGAGGCCTGAGATGCAG
AACACTTGTCAGCTAGAGGAAATCAGAGGCCTAGAGACAAGGTTGCTATC
AATGGCTTCCTTCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTCGCNCTTTTCCCCCTCCTTTTCCCCCTCCCCCCTTTT
TTTTTTTCNTTNCCCCCCCCCTCCCCTTCTTTGGGGTGGGTTTTTTGTTT
TTTTTTTTTTCCCCCCCCCCCCCNGNNNNCCCCCCCCCCCCCCCCAAAAA
AAAGGGGGGGTTTTTTTTTTTTNTTTTNTTTTTTTTTTCTTTTTTTTCCT
CTCTTTCTTCTTCTCCTTCTCTCCCTCCTTTCTTTTTCTTTCCTTCACTC
TCTATTTCTTTCTCTTTTCCTCTCTTTCCTCTTCTCTTTCTTCTTCTCCT
CCCCTCCCTTTTCTTCTCCTCTCTTCCCCCCTTCCCCCCTTCTTCTCCTT
TCCCTTCTCTTCCCTCTCTCTTCTCCCTCCATTTCTCCTTTTCCCTCCTC
CCCCCTTCTTTCCTTTCCTTCTTTCCCCCCCTCTCCTCTCCTTCATTTTC
TTCCCTTTTCCTCCTTTCCTCCCTCCTCCCGCTCTCTCTTCTTCTTCCTT
CTCCCCCTTCTCGCCCCACTCTTCTACTTCCTTTCTTTTCTTCATCACTC
ATCTCTCTTCATTCTCTCCTCCTCTTCTCCTTTCTTCCTCCTCTACTCTC
TCCTCTCCTTTTCTTCCCCTTTTCTCACTCCTCCTCCCCTCTCTCCCCCC
CCTTCCTCCCTCCTCCTCCCTCTTCCTTCCTTCCCTCCTCCTCTTCTCCC
CTTCCTTCTCCCCCTCCTCCTCTCCCTCTTTTTCCCTTCCTCCTCTTCCC
CCTTCTCTTCCCCCTTCTACCTACCACTCCTCTCTTCTTCCTCTCTTCTC
ACTCCTTTCTTCTCTTCCTTCTTCCCTCCCTCTCTCTTTTCCACTCTCTC
CCCCCTTACTTCTTCCCTCCCCTCCTCCTCTCTTTACCTCCACTCCCTCT
CCTCCTCTTTGCCCTTTCTCCTCTCTTCCCTCTTATCCTCTTCTCCACCC
TCTTCCTCCTTTATCTCCCCCT
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAATGGATCCATTTTAACCCCCTGG
AACAAAGCTCAGGTCTAAGGGAATCAAAAACCTCCCCTTAAAACCAAAAA
CCCTGAATTTTATAAAGAAAAAAGGGGGGAAAAGCCTCAAATATAGGGCC
CCGGGGAAAAATTTCCGGAACAAAACAGCATGGGTTTATGTTGTAAAATC
AAAAATTGCCAAAGGGAACCTCTTAAAAAGGCAAAGTTTCGGTAAGGAAA
AAAACCCCGCCAATAAAACACAAAGGCCACCAACAAATGGGAAAAGGGCC
TTTACCATTTTTATATTTGACCCCGCCCTATTATTCATTATTTCCAAGGA
GTTCAGAAAGTTGAATTCCAAAAATTAAAAAAACCCCTTTAAAAAGGGGG
GGCAAACTTAACCAAAAAATTCTCAATTGAGAAATACCAAAGGGCTAAAA
ACCCCCTGAAAAAGGTTCAACTTCCTTAATCTTCAGGAAAAGGCAAATCA
AAACACCCTTGAAATTCTACCTCCCACCAGCCAAAAGGGTTAAAATCAAA
ATTTCTTGGGACAGCAAATGTTGCCAAGAAGGTGAAAAAAAAGAACCCTT
CCTCATTTGTGGGGGGAATGGCAAATTGGTACAACCACTCTGAAATTCAT
CCTGTGGGTTCTTCAAAAAATTGAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l03.b1 MSMg01no064_l03.b1 CHROMAT_FILE:
MSMg01no064_l03.b1 PHD_FILE: MSMg01no064_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:50 2005
         (320 letters)



>mm_chr3_31960052_31960771
          Length = 720

 Score =  547 bits (283), Expect = e-160
 Identities = 307/315 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagttgagtgctacagactttttgaggtgcccgggaacatttcctttagcgct 63
           ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 204 ggaattccaattgggtgctacagactttttgaggtgcccgggaacatttcctttagagcg 263

                                                                       
Query: 64  tccctggagctctgctcttgtccccgacacaattccggagctactcccatccaagctggg 123
           |||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||||
Sbjct: 264 tccctggagctctgctcttgtccctgacacaatcccggagctactcacttccaagctggg 323

                                                                       
Query: 124 aggtgaaccaggattgtgagagacgatggagaaaaccttactggagggcactctttgcgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggtgaaccaggattgtgagagacgatggagaaaaccttactggagggcactctttgcgg 383

                                                                       
Query: 184 gtacctagaagaggcctgagatgcagaacacttgtcagctagaggaaatcagaggcctag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtacctagaagaggcctgagatgcagaacacttgtcagctagaggaaatcagaggcctag 443

                                                                       
Query: 244 agacaaggttgctatcaatggcttccttctggtgtgtgtgtgtgtgtgtgtgtgtgtgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agacaaggttgctatcaatggcttccttctggtgtgtgtgtgtgtgtgtgtgtgtgtgtg 503

                          
Query: 304 tgtgtgtgtgtgtgt 318
           |||||||||||||||
Sbjct: 504 tgtgtgtgtgtgtgt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)