BAC Information

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BAC

Clone NameMSMg01-064M10
Chromosome3 (Build37)
Map Location 130,563,445 - 130,563,852
singlet/doubletsinglet
Overlap genenone
Upstream geneCfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811
Downstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064M10.T7 (MSMg01no064_m10.b1)MSMg01-064M10.TJ (MSMg01no064_m10.g1)
ACCAG290151AG290152
length1,2321,285
length of high quality
(start - end)
424 (29 - 452)93 (166 - 258)
definitionCHROMAT_FILE: MSMg01no064_m10.b1 PHD_FILE: MSMg01no064_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:58 2005CHROMAT_FILE: MSMg01no064_m10.g1 PHD_FILE: MSMg01no064_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGCATTGTGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CCTGTCCTAACTTCCTTTAAAATGAACTAAGATATGGAAGTTTAGGCCAA
ATAAACCCTTTCCTCCCCAGTCTGCATTCGCCCATGGTATTTATTATAGC
AAAAGTAGCCCTAATCATGGTGTTTTATTATAGCAATAGTAACCCTGACT
AACGCATTTAGAAAAGGTATCAGAATCAATGTTGTTGTTTGGTGCTGGTT
GCAAGTCCTTCAATAGGAAGATGGCGGCTGGAGGTTGCCACACTTAAAAA
TGTCAACCAAGTTATCATACTCAGAAACTGGAGGAGGGATTGAATTGTGT
TGAATTGTCTATCCTTTATTTTATTTGAATCAATTCTCCTCTCGCTGCCT
AAAAATGACTGAGTTGACTATGGATAGAGGCTTGGTGCCAGTGTCTGTTG
ATTTTTTTCCCCCCCCCAGCCAAGGACGCTGCAGGGAAAGAACAGGTTCT
TCCAGTCTACAGAATCGGAGATGGCCAGAAGCATTGCTGAGGGTGTCTGT
TTGTGACAAGTGTCATCTCAAATGGCTTTGAATGACAAATGGCTCTCTGC
ATTTATAATTTCTGTTTGTTTCTCTTGCTCTCTTTGCCCACATGCATATG
AACACATAAATTCAGCAAAATTTAAATGTTCTGAAAAGCTCTTTCGAAAG
GTACCCTACTATTGTGATTATTGTGAGAAAGTACAAATCTGACCATCTAA
AATATAGGCAATCCTCTCTCTTGACAGCTGGTTGGCCCCTGTCCCAGTTT
GAGGAGGCCTTTTAACCCCCTCAAATCCCAATTATGTCAATATTATTTTG
ATATAAATGTAAACTCCATGTTAACTTTCCCGTTATTTTTATTATCCCCA
TTTATTAATGTTTATCCTTTTATAATTTCTTGTAAATTTTTATACCCCCC
TTTTCCCCTTTTAAAATTCTTTAACTTCTCCCTCCTGGTTTCACTTGTTA
CATTCCTTTTTTTTCTCTTCTCCTCTGTCATTCATTATATTTAGTTTTTA
TTCTCTTTCTTCCTTTTTTCTTAATAATCTTTTCTTTATTCTTTTCCTTA
TTTTCATTTAATTCTCTCCTTCCTTTTCTTGTCTTCTTATCTTTTCTCTT
TTATCCATTTCTCTTCTTCTTTACTTTATTATTTGCTCTATTTATATTAT
TTACTTTCTCTTCTTCCTCTTTATTTTTCTTT
NNCCAAAGTAGGAGACTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTCGAAAGGGTGAGACGGAAGCATCCA
AATTGTGAAGCCAGCCTGGGTTGTAAAGCCCGACTGAGAAGGAAAGAAGG
AAGAGAGAGATGGGAAGAAGGAAAGGAAGAAGAATTGAAGGCAATCCAGT
TTAAAATCAAATTATGTAAAACTTTTTCCTCTTCCAATAACATTTATTAA
TTTGAAGCATTATTAGATAAGGCAAAAAACACTTGATATATGGTTTAAAT
TTTCATCTTAAAAAATAGCAATAGTTTCCCAAGGTATATGTATATATATA
TATATAATCTTTTGTCTATTTAGGGACTTTAAGTATTCCGATTAGGTTTA
GTCTTTATCTAAACTGACGAGGAGGGTATTCCCACCTTCCCAAGAAGCTT
GTTTTTTTTACCCCCCCCTAGACAGGAAGTGACCCAGTTCAAAAAATGGG
TGGGGAATGTCTCCTTCACCCAGAGGCAAAGGTAAACCTACTTGCTATCA
CGCCCCATTCTAAGGAGCCCCGGAGTATCAGCTCTAACAGGCTGGAGGTC
AGGAAGGGTTTAGAGACCTGGATCTCCTCCCGATCCAGCTCCAGCATAGG
GTCGGGATGGCCCACGCACCCCGTCTGGCCTTCCTTTCTTTCCAGGTCAC
ACCGAAGGGTACCAATCTTGTCTGTTTGTTCGTTCAACCTTGTCGAATTT
GTGGCCTTTTATTTCTTTTTTCTTCCGAAGGTTTTGGTTTTTAAAAAATC
CCACTTTCTTATGTGTGAAGGTCTGTTTGATTTTTTCTAGGTTCCTCTCT
TATTTTTGTTGTGGTTTTTCATATTTTTTATTTTCTTGGTGTGGCTTTTT
CTTATCTTTGTTTACTTTTTCTTTGTTAATTATATTTATTATCTATTTTT
TTATTTTTTTCTTTTCTCTTTTTACTTCTTATTACTTTTTTTTATTTTTT
TTCTTATTTATATATTTATTTTTTATTCTCTATTTTATTCTTGTATTTTT
TTTTATTTTTCTTTCCTTTTTGTTATTTTCTCTTTTTTTAATATTTTATC
CATTTCTTATTAATTTCCTTCTTTATTCCATTTACTATTTATCTTACATC
TACTTTACTTCTCTTTTTCATTTCTTTATTTTTTTATTTCTTTTTTCTTT
TCTTTCTTTCTTACGTCTTATCTTTTATACAATTACAATGACCGTTTTCA
TTTTCTCTCTACTTACATTTTCTTTCATCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_m10.b1 MSMg01no064_m10.b1 CHROMAT_FILE:
MSMg01no064_m10.b1 PHD_FILE: MSMg01no064_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:58 2005
         (424 letters)



>mm_chr3_130563071_130563894
          Length = 824

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%), Gaps = 1/408 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  gaattcctgtcctaacttccttt-aaaatgaactaagatatggaagtttaggccaaataa 76
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattcctgtcctaacttcctttaaaaatgaactaagatatggaagtttaggccaaataa 723

                                                                       
Query: 77  accctttcctccccagtctgcattcgcccatggtatttattatagcaaaagtagccctaa 136
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 722 accctttcctccccagtctgcatttgctcatggtatttattatagcaaaagtagccctaa 663

                                                                       
Query: 137 tcatggtgttttattatagcaatagtaaccctgactaacgcatttagaaaaggtatcaga 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tcatggtgttttattatagcaatagtaaccctgactaacgcatttagaaaaggtatcaga 603

                                                                       
Query: 197 atcaatgttgttgtttggtgctggttgcaagtccttcaataggaagatggcggctggagg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atcaatgttgttgtttggtgctggttgcaagtccttcaataggaagatggcggctggagg 543

                                                                       
Query: 257 ttgccacacttaaaaatgtcaaccaagttatcatactcagaaactggaggagggattgaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttgccacacttaaaaatgtcaaccaagttatcatactcagaaactggaggagggattgaa 483

                                                                       
Query: 317 ttgtgttgaattgtctatcctttattttatttgaatcaattctcctctcgctgcctaaaa 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttgtgttgaattgtctatcctttattttatttgaatcaattctcctctcgctgcctaaaa 423

                                                           
Query: 377 atgactgagttgactatggatagaggcttggtgccagtgtctgttgat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgactgagttgactatggatagaggcttggtgccagtgtctgttgat 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)