BAC Information

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BAC

Clone NameMSMg01-065C12
Chromosome3 (Build37)
Map Location 138,983,450 - 138,983,763
singlet/doubletsinglet
Overlap geneB930007M17Rik
Upstream geneAdh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1, EG229879
Downstream geneLOC100039840, LOC229883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065C12.T7 (MSMg01no065_c12.b1)MSMg01-065C12.TJ (MSMg01no065_c12.g1)
ACCAG290433AG290434
length680688
length of high quality
(start - end)
376 (50 - 425)315 (77 - 391)
definitionCHROMAT_FILE: MSMg01no065_c12.b1 PHD_FILE: MSMg01no065_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:35 2005CHROMAT_FILE: MSMg01no065_c12.g1 PHD_FILE: MSMg01no065_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGAGGGTGCTGTCATGTCTTGGGGATGCTATTTGACCCTG
ATCTTCTCCAACCTCTGGCTCTTATGATCTTTTGTAGACATTGGTATTTG
TCTTAGTTAGGGCTTTACAGCTGTGAACAGACACCATGACCAACGCAAGT
CTTATAAAAAAAACAACATTTAATTGGGGCTGACTTCCAGGTTCAGAGGT
TCAGCCCATTATCACCAAGGCGGGAGCATGGCAGTAACCAGGCAGGCATA
GCTCAGGTACAGCTGAGAGTTCTACATTTTCATCCAAAGGCTGCTAGTGG
AAGACTGACTTCCAGGCAACTAGGGTGAGGGTCTTAAGCCCATACCCACA
GTGACACACTATTCCAACAAGGTCACACCTTCAAATGGCGTCACTCCCTG
GTCCAAGAATATACAAACCATCACAGTATGCTATAGATCCAAAGTGATCT
GAGGAGCTGGTTCAGTGATTAAAGTGCTTGCTATACAAACAAGATGATCA
GAGTCCTTATCCCCAGAATCTATGTAACTGTTGTGAGGGCATGATCTCAC
ACATCTTGTCCCACAGAAGAAGGTGGAATAACAACCCCAGAAGATTGCAG
GTCCTTGCGCCTCCATTATACTTGAGCGCC
TTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTTTCAGAAATATGAGAGGT
TATTTTATTTCAAGTCTGTTTTGAAAGTAGTAACTTGTATCTTTTCCTGT
ATATGCATTTATTTCATGCTATTGTGGTTAATAGAAGGGATTTAAAACAG
TGTTTTGTTGACTAGAGTAATTTCCTTTACATTTATATTTTACTAATAAG
TGTTTGAGACCTAAAAGGACAATATAAGGGGACTAGAGAGGAGACCGACT
TCAGTTTCCCAGAACCCACAGGATGGAAAGAGGGAACCAATTCCCACTAA
TTGTTCTGTGACCTATGTGCACACACATGCGCGCACACAGACACACAGAG
ACACACTAGAAAGAGGCAAAGAATTAAAGAAAGAAAGATAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGACAGATAGAGAGAGATAGTTAGG
GAGGTAGGGAGGGAGCTTTTTTTTACTTCCCCTTTTTTTTTTTTTCTCCC
CGTCTTTTTTCCACCCTTATATTTCTTTTTTCACATCATTTCGCTAGTTA
CTATTTTTCCCCTTTCTACCCTTTTTTCGCTGTCCTTTAACAACTACCTT
CCATATTCTTCTTTTATCTTCTTTTTTCCTTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_c12.g1 MSMg01no065_c12.g1 CHROMAT_FILE:
MSMg01no065_c12.g1 PHD_FILE: MSMg01no065_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:35 2005
         (315 letters)



>mm_chr3_138983346_138984059
          Length = 714

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtttcagaaatatgagaggttattttatttcaagtctgttttgaaagtagtaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cattgtttcagaaatatgagaggttattttatttcaagtctgttttgaaagtagtaactt 359

                                                                       
Query: 61  gtatcttttcctgtatatgcatttatttcatgctattgtggttaatagaagggatttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtatcttttcctgtatatgcatttatttcatgctattgtggttaatagaagggatttaaa 299

                                                                       
Query: 121 acagtgttttgttgactagagtaatttcctttacatttatattttactaataagtgtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acagtgttttgttgactagagtaatttcctttacatttatattttactaataagtgtttg 239

                                                                       
Query: 181 agacctaaaaggacaatataaggggactagagaggagaccgacttcagtttcccagaacc 240
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 238 agacctaaaaggacaatataa-gggactagagaggagacggacttcagtttcccagaacc 180

                                                                       
Query: 241 cacaggatggaaagagggaaccaattcccactaattgttctgtgacctatgtgcacacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cacaggatggaaagagggaaccaattcccactaattgttctgtgacctatgtgcacacac 120

                          
Query: 301 atgcgcgcacacaga 315
           |||||||||||||||
Sbjct: 119 atgcgcgcacacaga 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 714
Length adjustment: 9
Effective length of query: 306
Effective length of database: 705
Effective search space:   215730
Effective search space used:   215730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)