BAC Information

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BAC

Clone NameMSMg01-065E14
Chromosome3 (Build37)
Map Location 64,496,291 - 64,496,435
singlet/doubletsinglet
Overlap genenone
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
Downstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065E14.T7 (MSMg01no065_e14.b1)MSMg01-065E14.TJ (MSMg01no065_e14.g1)
ACCAG290533AG290534
length685676
length of high quality
(start - end)
132 (106 - 237)144 (77 - 220)
definitionCHROMAT_FILE: MSMg01no065_e14.b1 PHD_FILE: MSMg01no065_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:45 2005CHROMAT_FILE: MSMg01no065_e14.g1 PHD_FILE: MSMg01no065_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:45 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTTATCATXXXXXXXXXXXXXXXXXXXXXXXXTATATTCAGAGAATCCG
CGGAATTCTCTTTCTTGCCACATATTCACCATGGAGATTCCTCATGCACT
ATCAACATGTCTTTGTTCTCTGTAGCTACTCCCTTATTTCACACACCTGT
CATGATTTAAAATTATAGCCATCATTTGAAATTACCATGTGATGACACAG
ATATATTCTAAGAAATGTACTCTTAGGTGATTCAGCCATTGTAGAAAAAT
CACAGAATCTGCTTGCATAAACTACATCAGGTACATCTTATGTGTACTTG
CTGATGCCTTTGGCATGTCTATTCTTGCATTTTCAATAGCTGGGGAGTTC
CACAGCTGTTGTCTGATATAGAGCCTATTTTGATGACGAAGTGAGTTTTG
CCTCTTCTTAATATTTTTTATTGTTCCGCTCATTATTTGCGTCCCTCTGC
TTTACCACTCTTTACTATTTTAATTTTTTACTGCCTTACTTAATGACTTC
TTTTTTAGATTCCCATAGATATCTTTTCCCTTCTTCTTTTATGATCTATA
TCTTTTTTCCCGCTACTATTCTATGAATTCTAACCCCCTACCGGTAATCT
TTTTTTTTCTCTTAGTTTTTTATTGAAAAGCTTCTCTACAGGGGCATATT
ATAATAATCCTTTAATAGTATGACCTTATTCCCCC
GTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTAGAGACTGTGGGACCTTTA
GCAAGGTAGTTGTGTAGCTTACAGTGTGCTTCTTTCCATCCCAGACCATC
TTATCATTTTACATGATTACTCTTGTGGGTTATGTGAAAAAGACTAGTGA
TTTATTATTTTCTTCAACAAAACTGAATAGAAATGTAAATAAACCTACTC
TAACATATTTCTATAAACCAAACCTGTCTATGTCACCTCTACTGAGCAAG
CTGTCACAGCAGCCCATGTCTCACTCATTGTGCAATGCATGTGCCTTCAA
TTCTTGGAACCTTAAGACAATTTTAGGACCGTCTCCTACTCAGTCTTCAG
TATAGTTTATAAACATGTACTTACAAGATTCTATGATTTTATTCATATTT
CCCATTTCATGCGTTTCCATTGGGATTTCCTTATGCTTTTTGTTGTAAGT
CTTTTCCAATTGTATTACGATTCACAGTATTATTCTTCAGCCACCTTGCT
AAAAATTTATTAATTAACTCGATATAAGTTCATTACTTCGCCTTGCTTTG
CATGGTTCTTTTTTTAACCATCGATACACAGGTTGCTTTTTGTCAGATAA
CAATTAATTTTTTTTGACTGACTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_e14.g1 MSMg01no065_e14.g1 CHROMAT_FILE:
MSMg01no065_e14.g1 PHD_FILE: MSMg01no065_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:45 2005
         (144 letters)



>mm_chr3_64496091_64496635
          Length = 545

 Score =  226 bits (117), Expect = 4e-64
 Identities = 138/145 (95%), Gaps = 1/145 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtagagactgtgggacctttagcaaggtagttgtgtagcttacagtgtgcttctttc 60
           |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct: 201 tttgtagagactgtgggacctttagcaagggagttgtgtagcttatagtgtgcttcattc 260

                                                                       
Query: 61  catcccagaccatcttatcattttacatgattactcttgtgggttatgtga-aaaagact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 261 catcccagaccatcttatcattttacatgattactcttgtgggttatgtgacaaaagaca 320

                                    
Query: 120 agtgatttattattttcttcaacaa 144
           |||||||| ||| ||||||||||||
Sbjct: 321 agtgattttttagtttcttcaacaa 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 545
Length adjustment: 8
Effective length of query: 136
Effective length of database: 537
Effective search space:    73032
Effective search space used:    73032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)