Query= MSMg01no065_f04.b1 MSMg01no065_f04.b1 CHROMAT_FILE:
MSMg01no065_f04.b1 PHD_FILE: MSMg01no065_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:47 2005
(251 letters)
>mm_chr3_25043145_25043795
Length = 651
Score = 410 bits (212), Expect = e-119
Identities = 239/248 (96%)
Strand = Plus / Minus
Query: 4 gaattccctatgttatctacgaatcatctcgaccttcagatccttctgcctctacctccc 63
||||||||||||| | | |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 451 gaattccctatgtgacccacgaatcacctcgaccttcagatccttctgcctctacctccc 392
Query: 64 ctccagagtgcggggacatttcagtttctgccatgccaggcttgtacccaagatcctggt 123
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 391 ctccagagtgcggggacatttcagtttctgccatgccaggcttgtacctaagaccctggt 332
Query: 124 ctgggccacctaaccgtgtcccagctatgtttccgctctttaaaaatccctgaactattt 183
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 331 ctgggccacctaaccgtgtcccagctatgtttcctctctttaaaaatctctgaactattt 272
Query: 184 gagaaaccgaggcacagttttgaacttgcctacctggtctagacaactttgctcttttta 243
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 271 gagaaaccgaggcacagttttgaacttgcctacctggcctagacaactttgctcttttta 212
Query: 244 tcttttaa 251
||||||||
Sbjct: 211 tcttttaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_f04.g1 MSMg01no065_f04.g1 CHROMAT_FILE:
MSMg01no065_f04.g1 PHD_FILE: MSMg01no065_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:47 2005
(520 letters)
>mm_chr3_24915615_24916534
Length = 920
Score = 907 bits (469), Expect = 0.0
Identities = 507/521 (97%), Gaps = 4/521 (0%)
Strand = Plus / Plus
Query: 1 ataccagatactattattgggac-aaaaacaagtggtttgacaggtaattagccttcagt 59
||||||||||||||| ||||||| |||||||||||| |||||| ||||||||||||||||
Sbjct: 203 ataccagatactattgttgggacaaaaaacaagtggcttgacatgtaattagccttcagt 262
Query: 60 gagaacttattactattattttggtaaagtattaaaccaacatacataaaccaattcctg 119
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaaacttat---tattattttggtaaagtattaaaccaacatacataaaccaattcctg 319
Query: 120 atgattatgattatacccataaatcagtctaccattcagccctcatcagagatgcatcac 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 atgattatgattatacccataaatcagtctaccattcagcactcatcagagatgcatcac 379
Query: 180 cttgcagtagatggtgattaacatagaggtcatcagtggtcacttgcacagaataagaga 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 cttgcagtagatggtgattaacatagaggtcatcggtggtcacttgcacagaataagaga 439
Query: 240 ctgcagaatactgatgatcactaatgtaacatctgtattacagctcctccaggatcttgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgcagaatactgatgatcactaatgtaacatctgtattacagctcctccaggatcttgg 499
Query: 300 tagtagaataaaatacttaagtgccaagtgtgatcaatgagtataatgaggcagtgtctt 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 tagtagaataaaatacttaagtgtcaagtgtgatcaatgagtataatgaggcagtgtctt 559
Query: 360 cgagacataacgtgagagttgcacataagaacttagaactgcagggatagccctgctgtg 419
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 560 cgagacataacgtgggagttgcacataagaacttagaactgcagagatagccctgctgtg 619
Query: 420 aaagatctgtacactcaggccagataaaatcccatcttggagtgtggagagacacaaagt 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaagatctgtacactaaggccagataaaatcccatcttggagtgtggagagacacaaagt 679
Query: 480 cacacacttgagtgcgggaggtataagctactgcttggtct 520
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cacacacttgagtgcgggaggtataagctactgcttggtct 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
