BAC Information

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BAC

Clone NameMSMg01-065H03
Chromosome3 (Build37)
Map Location 76,098,701 - 76,098,919
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065H03.T7 (MSMg01no065_h03.b1)MSMg01-065H03.TJ (MSMg01no065_h03.g1)
ACCAG290654AG290655
length795753
length of high quality
(start - end)
161 (110 - 270)219 (145 - 363)
definitionCHROMAT_FILE: MSMg01no065_h03.b1 PHD_FILE: MSMg01no065_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:57 2005CHROMAT_FILE: MSMg01no065_h03.g1 PHD_FILE: MSMg01no065_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTCTTTTTTNTCNTTTTTTTTTTTTTCTTTTTTTTCTTTNNNTTT
TTTTTTCTTTTTNTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCTGATCTTTCCAAGACTTTTATCATGAAAGG
GTGTTGGATTTTTTCAAATGCTTTCTCCACATCTAATGAGATGATCATGT
GTTTTTTGTTTTTGAGTTTGTTTATATATTGGATTATGTTGATGGATTTC
CATATATTAATCCATTCCTGTTTTCCTTGAATGATACCTACTTGTTCTGG
ATGGATGATTTGTTTTTATGTTTACTTTTATTTTCATTTTCTTATATTTT
CTGATTTATTTTTATTAATATTATCTTTTATTTTTTTTTACTATTCATAA
AATTCTCTTTTTTTATTTTTTCCACTCTTTCCCTTTCATTTTTTCTTTTT
TTTATTCTTTTTTCTATCTATTCACATTTTATAACCTTTTTTTTAATCTT
GAGTATTTTATTTAATTCTTATACTTTCTTCCTTTCTTTTCATTTTTTGT
TACCTGTTTCTCTCTCTTTCTTTTCTTCAATCCTACTTTTCTTTTTTCTT
TACAATAATTACAGTATTTTACTAATTTTCTATCCTTATTATTATTCTTA
CTTTCTTTACATTTACACTACTACAATATATTATCTTTGTTTTCTTTATT
CTTAATCTTACTTCTTTTTTTTTTTAAATTAAATATTTATTCTTCATTCT
TCCTCCTTTTATACTATTATTTCTTCTTCTTTTATAACACTTTTT
TTTTTTTTTTTTTTATTTTTTNATTTTTTATTTTATTTTTTATTTACAAA
ATTTTNACATCTGAANNCCCGATGATATGTXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAG
TGCTTGCTTCCTGGCTTGTGAACTGTTTGCTCTGAATGGCAGGGAAAGTA
TTATTCTGAGTGCTCTTTGGTATCCAGGGACTGTGCCAGGCAAACTTTCC
CTTGATTTTTCTACCACCACAGTGAATTTCCATGAAAAAATCTGCTGTGG
AATACCATAGAATAGGAATTAATGGTAGACAGATACCGGAAAGAAAACAT
TGCAAACCCTGAGGGCTCAGATGAGGACAGGAGTAAGAGGTTCTGTTGCT
GCCCTCTTTTCCCCTCTGTAGCTCTTTCCAAGTAATGCGTGCTTTCAACT
CTCACTGCCTGAGCCTCCACAGGCTCTCTGTTCAACTCCAATTCATAAAA
CTGCTTTGTTATCCCTTTGTGTTGGTCGACAAACTGTCTAATCCATTCCC
TGCAGAGCCCCAGATCTCACATGGCTGACTGCCTTTTCTGAGGGTCACTG
TCCTTTCTTCCCTGATGTCTACATCTTGTAAGACCTTTCTTATATTTGCT
CTCCATTTTTTATCTCCTTCCTTACTTGAAGAAATTCTTTCCATTTATCT
ATAATTCTTGTACTTTGCTACTAATCTTCACTTCTCCTAACCTACACCCA
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_h03.g1 MSMg01no065_h03.g1 CHROMAT_FILE:
MSMg01no065_h03.g1 PHD_FILE: MSMg01no065_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:57 2005
         (219 letters)



>mm_chr3_76098501_76099119
          Length = 619

 Score =  385 bits (199), Expect = e-111
 Identities = 214/219 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaagtgcttgcttcctggcttgtgaactgtttgctctgaatggcagggaaagtattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 419 tttaagtgcttgcttcctggcttgtgaactgtttgctctgaatggcagggaaagtgttat 360

                                                                       
Query: 61  tctgagtgctctttggtatccagggactgtgccaggcaaactttcccttgatttttctac 120
            | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 359 cccgagtgctctttggtatccagagactgtgccaggcaaactttcccttgatttttctac 300

                                                                       
Query: 121 caccacagtgaatttccatgaaaaaatctgctgtggaataccatagaataggaattaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 caccacagtgaatttccatgaaaaaatctgctgtggaataccatagaataggaattaatg 240

                                                  
Query: 181 gtagacagataccggaaagaaaacattgcaaaccctgag 219
           |||||||||||||||||||||| ||||||||||||||||
Sbjct: 239 gtagacagataccggaaagaaagcattgcaaaccctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)