BAC Information

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BAC

Clone NameMSMg01-065I07
Chromosome3 (Build37)
Map Location 57,110,651 - 57,110,817
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040139, LOC666585, Tm4sf1
Downstream geneLOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065I07.T7 (MSMg01no065_i07.b1)MSMg01-065I07.TJ (MSMg01no065_i07.g1)
ACCAG290709AG290710
length685675
length of high quality
(start - end)
155 (150 - 304)188 (71 - 258)
definitionCHROMAT_FILE: MSMg01no065_i07.b1 PHD_FILE: MSMg01no065_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:03 2005CHROMAT_FILE: MSMg01no065_i07.g1 PHD_FILE: MSMg01no065_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAATT
CCATAATTTCCCTAACCTGGGATCCATTTTATATATATATATATATATAT
ATATATATATATATATATATATACATATATTGCAGAGGACCATGTGCAGA
CCCATGTAGGCTTTGTGTGTGCTAAGATTCAGGCTCTGTGAGTTCATTTG
TTCATGTTAATTTAGAGGACCTTGTTTCATTGGTGTTGTACACCCCTCTG
GTTCTTAACACTCTTTCTGCCTTGTTTGCTTTGAAGTTTCCTGAGCTCTA
AGGGGAGGGATTTGATATATACATCCCAATTAGGACTGAATGCTCCAATA
TCTCCCAATCTCTAATTCTCTGCATAATTTCTGGTTTTGCGTCTCTATAT
TTGTTCTCATCTACCACCAGTGAAAGCTTCTGTGATGATGTTTGAACATC
GCTCTAATCTATGATTATAGTATAACATCTCTATGAATCATTTTATCTCT
ATATAACTTTCTCAGTGCTTTTAGACCACAACCACTTGATTTTTGCCTAT
ATACTCGCGATATCCATTCTCAGATTCTTTGCTTATTCAGTCACTTTGGA
CTTGCTCTTCATATTTGTATTCTGATCCTTTTCCCCCCCACTCATATGCT
CCCACTGATTCTATTAATCTTGTAAATATGCCTTN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTCTATCTTTGTATGTGTTGGGTATGTGCA
CATGTGTGTGTTCTGAGGCATGTTTGCTCTAGTGTTTGCTTGTGTGTGTA
CACATTGAGGCCAGAAGTTACTGATGTTACGATGTCTTCTTTGCTTTCTA
CCTTGCCTGTCTGATTTGTTTGTTTGTTTGTTTATTTAAGACAAAGACTC
TAACTGAACTTATAACTAGGCTGCATGACCAATGACCCTTCATATGAATC
CGTCTCAGTGAATCTTGTTTAGGTATGTCATGTTGTCTTCCTCCATTTGT
CTGCAAAATCTTATTTTGTCTGCTTAGTCCTCTTCTCCAGTTGCCTGTTG
TTGTTACCTCGCTATGTGTAATTGACTATCCTATAAATGCCACATATGGA
TTTTATATAAAGTATTGTGTAATCCAGTTTATGCCTTGTTCTATAAGATT
CCTTATCATTTAAAGCCTTGTCTTTATAAGCTTCACCTTTCCCTTGAAAC
TCTGCCTTAAACTACATTTCTGGTATCATTTTTGTATGACCCCGCTTAAC
TACCCTAATCTCCTTCTCCCACTTTCACTTGCGTTGATTTTCATCCCCCT
CCTTCCCCCTTACCATCATCCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_i07.g1 MSMg01no065_i07.g1 CHROMAT_FILE:
MSMg01no065_i07.g1 PHD_FILE: MSMg01no065_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:03 2005
         (188 letters)



>mm_chr3_57110474_57111061
          Length = 588

 Score =  292 bits (151), Expect = 8e-84
 Identities = 163/167 (97%)
 Strand = Plus / Minus

                                                                       
Query: 22  gtatgtgcacatgtgtgtgttctgaggcatgtttgctctagtgtttgcttgtgtgtgtac 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 344 gtatgtgcacatgtgtgtgttctgaggcatgtttgctctagtgtttgcttgtgcgtgtac 285

                                                                       
Query: 82  acattgaggccagaagttactgatgttacgatgtcttctttgctttctaccttgcctgtc 141
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 284 acattgaggccagaagttgctgatgttacgatgtcttctttgctttctaccttgtctgtc 225

                                                          
Query: 142 tgatttgtttgtttgtttgtttatttaagacaaagactctaactgaa 188
           |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 224 tgatttgtttgtttgtttgtttgtttaagacaaagactctaactgaa 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)