BAC Information

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BAC

Clone NameMSMg01-065O22
Chromosome3 (Build37)
Map Location 102,115,540 - 102,275,867
singlet/doubletdoublet
Overlap geneEG433633, Ngfb
Upstream geneIgsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1
Downstream geneTspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065O22.T7 (MSMg01no065_o22.b1)MSMg01-065O22.TJ (MSMg01no065_o22.g1)
ACCAG291025AG291026
length695693
length of high quality
(start - end)
248 (73 - 320)312 (97 - 408)
definitionCHROMAT_FILE: MSMg01no065_o22.b1 PHD_FILE: MSMg01no065_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:34 2005CHROMAT_FILE: MSMg01no065_o22.g1 PHD_FILE: MSMg01no065_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,115,540 - 102,115,787)(102,275,556 - 102,275,867)
sequence
TCATAATTTGCGGCGCTCTACGACTCCTATAGTTCCAAAAAACGCGGAAT
TCATCTGTTGTTTTCGAAAGAGCAGCCAAGGGTCCAGAGGAATGACCTTC
TCTAGGCCCTTTCTGCAAACTGTCTGCGTTTTATCAATGGTCTTGACTTC
TTAAAACAAAACAGCATGAGAGGCAGTTATCCAAGCGCGTGAGCTTCCCA
CTGTCAGGATACGGACAGGCAAGAGTCCTGGAGGCAAGCAGCCTGTGACC
TCAGACATAGGAGGCCCTCAGATTAATTTGCTTCGGGTGTTGAAATCCAG
CAAGAAAGCAGTTACTGTTGATTGTTACTGCTATTCCAACCTCAATGAGA
TTTTATCTATGGGGAGAAAGATTATGGGAGACCAACTTTATTGTCATTCA
GAGGAAGTATTTATAACCTTGGCAGATTCTCATGTTATAGAGTACAGTTT
TGGCTGCCAAACAGATTCATACATCGAATCGAATGACCTGATTGTATTTA
CCGCTGCATACACGTGGTTCTATATGCACAGTGCCGATCCAGCTCAGCAC
TGGATTGACCAGCGCGCTGCTTGATGCCACTATCTTTGATTGTATTTTGT
CCTACCCCGCACACACTTGTAATCCCACTCCTATATATCAGAACGAACTC
AAAGGATGCTTGGTGTTCTTGGCTACATTCATATAACTATGGCCC
CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCTGGAGGAGAATGGAGTGTGGTGCC
TCATCCTTTCCTCCCACTGCCCTCAGGAGGCGGGGGCTGTAAGGTGGGTG
AGAGGAGAACGTGAGAGCCCGTTCTTTGCTAAAGATTAAAAGGAAAGAAC
TGAGAGCCACCAGCATGAGGATGACTGTCCTGAACAAACTCAGCTCTGCA
AACTTTTTGATATGCAGGTGGTTATCCAGGCATGACAGTGAGTTTGGCTG
ACTATTAAACCTTCTGAGTCACTGTGATAGTCTGTCAAATCATGTGTCCC
TCTCCACAGAGACCCTGACCTCTGACACCTGGGACCCTTAACATTTTCTT
GGGATGAGGCAAAGTGCATACATGTGTCATTAGCCCCATCCTCTTTTAAG
GATCCAGCTACAAGGGACAGTCATGTCTTCTGCATGTCATTACCAGCCAT
GCTGGCCTCATCCCCCAGACCACGTTCTCCTCCAACTGCGTGTCCCCTGA
AAACCTCTGGGAATACCGTCCATGATGAGCTATCAAATAAAGAAGACAGG
CTGACTCATGGTTTACTCTGTATACAAAAACCAAAAGTGGCCCGGGAATC
AGGGGGAGGGGGAGGGGGCCTTGGGGAAAAAACCGCTAAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_o22.b1 MSMg01no065_o22.b1 CHROMAT_FILE:
MSMg01no065_o22.b1 PHD_FILE: MSMg01no065_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:34 2005
         (248 letters)



>mm_chr3_102115340_102115987
          Length = 648

 Score =  433 bits (224), Expect = e-126
 Identities = 242/248 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagccaagggtccagaggaatgaccttctctaggccctttctgcaaactgtctgcgtttt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cagccaagggtccagaggaatgaccttctctaggctctttctgcaaactgtctgcgtttt 260

                                                                       
Query: 61  atcaatggtcttgacttcttaaaacaaaacagcatgagaggcagttatccaagcgcgtga 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaatggtcttgacttcataaaacaaaacagcatgagaggcagttatccaagcgcgtga 320

                                                                       
Query: 121 gcttcccactgtcaggatacggacaggcaagagtcctggaggcaagcagcctgtgacctc 180
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttccaactgtcaggatacagacaggcaagagtcctggaggcaagcagcctgtgacctc 380

                                                                       
Query: 181 agacataggaggccctcagattaatttgcttcgggtgttgaaatccagcaagaaagcagt 240
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 381 agacataggaggccctcagattcatttgcttcgggtgttgaaatcaagcaagaaagcagt 440

                   
Query: 241 tactgttg 248
           ||||||||
Sbjct: 441 tactgttg 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no065_o22.g1 MSMg01no065_o22.g1 CHROMAT_FILE:
MSMg01no065_o22.g1 PHD_FILE: MSMg01no065_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:34 2005
         (312 letters)



>mm_chr3_102275356_102276067
          Length = 712

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctcatcctttcctcccactgccctcaggaggcgggggctgtaaggtgggtgagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgcctcatcctttcctcccactgccctcaggaggcgggggctgtaaggtgggtgagagga 453

                                                                       
Query: 61  gaacgtgagagcccgttctttgctaaagattaaaaggaaagaactgagagccaccagcat 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaatgtgagagcccgttctttgctaaagattaaaaggaaagaactgagagccaccagcat 393

                                                                       
Query: 121 gaggatgactgtcctgaacaaactcagctctgcaaactttttgatatgcaggtggttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 392 gaggatgactgtcctgaacaaactcagctctgcaaactttttgatatgcaggtggctatc 333

                                                                       
Query: 181 caggcatgacagtgagtttggctgactattaaaccttctgagtcactgtgatagtctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caggcatgacagtgagtttggctgactattaaaccttctgagtcactgtgatagtctgtc 273

                                                                       
Query: 241 aaatcatgtgtccctctccacagagaccctgacctctgacacctgggacccttaacattt 300
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaatcatgtgtcccacaccacagagaccctgacctctgacacctgggacccttaacattt 213

                       
Query: 301 tcttgggatgag 312
           ||||||||||||
Sbjct: 212 tcttgggatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)