Query= MSMg01no066_f02.b1 MSMg01no066_f02.b1 CHROMAT_FILE:
MSMg01no066_f02.b1 PHD_FILE: MSMg01no066_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:04 2005
(494 letters)
>mm_chr3_122266657_122267547
Length = 891
Score = 924 bits (478), Expect = 0.0
Identities = 489/494 (98%), Gaps = 3/494 (0%)
Strand = Plus / Minus
Query: 1 ccaatttggaccacatagtacaacccagtttttgttggtttaaggaaaaactcaacacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ccaatttggaccacatagtacaacccagtttttgttggtttaaggaaaaactcaacacaa 632
Query: 61 aaacaagtagtcttttgtctctgctgatcatattcctgagatatctgatagaaacaacat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 631 aaacaagtagtcttttgtctctgctgatcatattcctgagatatctgataga---aacat 575
Query: 121 caaaccactttgaagggatatttccacatcttaactgtattgtgcttctatgattaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 caaaccactttgaagggatatttccacatcttaactgtattgtgcttctatgattaaaaa 515
Query: 181 acatggaagcaaacaccaataccaaccaaagaagactcatttataataaaaactttcttg 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 514 acatggaagcaaacaccaataccaaccaaagaagactcgtttataataaaaattttcttg 455
Query: 241 ttatggacagagaattagatatgttttgagttgagtattagttatgttcatgttattttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttatggacagagaattagatatgttttgagttgagtattagttatgttcatgttattttt 395
Query: 301 ctttattgtcaataaccaataactgatatttatgacataaatattagaatcaatataagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctttattgtcaataaccaataactgatatttatgacataaatattagaatcaatataagt 335
Query: 361 tggttataatatatttagttttccaaattagaaagaacaaagtttactttcattgtttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tggttataatatatttagttttccaaattagaaagaacaaagtttactttcattgtttag 275
Query: 421 ttcatttgtacataatacacactaggaacatttaagctacttcacaaataagtttgtaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttcatttgtacataatacacactaggaacatttaagctacttcacaaataagtttgtaaa 215
Query: 481 cttttctttacaga 494
||||||||||||||
Sbjct: 214 cttttctttacaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 891
Length adjustment: 10
Effective length of query: 484
Effective length of database: 881
Effective search space: 426404
Effective search space used: 426404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_f02.g1 MSMg01no066_f02.g1 CHROMAT_FILE:
MSMg01no066_f02.g1 PHD_FILE: MSMg01no066_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:04 2005
(398 letters)
>mm_chr3_122111393_122112190
Length = 798
Score = 754 bits (390), Expect = 0.0
Identities = 396/398 (99%)
Strand = Plus / Plus
Query: 1 cactcacagcatcaatgtctccagaggcaccttacctgtcctgtgttttgattttgtaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcacagcatcaatgtctccagaggcaccttacctgtcctgtgttttgattttgtaag 260
Query: 61 cagtgtggtaccagcctatttttgtaccgagtacttcaaggtcagagaccgccttgcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgtggtaccagcctatttttgtaccgagtacttcaaggtcagagaccgccttgcacg 320
Query: 121 cagggggacggacacgacttaagttttgtgagtcggatactcagagtgaagaaacagaaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 cagggggacggacacgacttaagttttgtgagtcggatactccgagtgaagaaacagaaa 380
Query: 181 ctagaaatttaatcatccgacccacaatccactgtgagtcactgcagaatgtgtggggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagaaatttaatcatccgacccacaatccactgtgagtcactgcagaatgtgtggggat 440
Query: 241 tgttcattgacttccttccattggtcaccgaggaagtgggctctcactccctccgtgttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttcattgacttccttccattggtcaccgaggaagtgggctctcactccctccgtgttc 500
Query: 301 atgaacccgagacatacaaggtcacatggagatcacacagggggtcagtcttcccggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaacccgagacatacaaggtcacatggagatcacacagggggtcagtcttcccggaaa 560
Query: 361 tgctgacaactgagaagtctgcctcccacacccaccgg 398
|||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tgctgacaactgagaagtctgcctcccacatccaccgg 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
