BAC Information

Click to search

BAC

Clone NameMSMg01-066H12
Chromosome3 (Build37)
Map Location 155,696,419 - 155,830,222
singlet/doubletdoublet
Overlap geneLOC624519
Upstream geneTnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
Downstream geneLOC100040901, 4930570G19Rik, Negr1, LOC100041152, LOC668853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066H12.T7 (MSMg01no066_h12.b1)MSMg01-066H12.TJ (MSMg01no066_h12.g1)
ACCAG291434AG291435
length661646
length of high quality
(start - end)
380 (55 - 434)411 (35 - 445)
definitionCHROMAT_FILE: MSMg01no066_h12.b1 PHD_FILE: MSMg01no066_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:16 2005CHROMAT_FILE: MSMg01no066_h12.g1 PHD_FILE: MSMg01no066_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,696,419 - 155,696,798)(155,829,812 - 155,830,222)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTAGTGACAGTTTTGAGAGATATTGATAAGGGAGAATTTAGTCAT
AGATTCAGAGGGTCTAGTAGAAAGACAAAATCTATCTCACCACCATCAGT
CATTTTATGGTGTCTAGTTTGAACCCATGTTCCCTTTGAGTGAAATCACA
TGACTTTAATTTTCTCTCCTCCTCTCCTCTCCTCTTCTCCTACTTCTTCT
GATTGTCCAGATCCAGTGCTGTGGAAGTGTGTTTTTAAAACAAAGAAATG
TCATATGCTTTCACACTACTATTAGAGAATTACCCCCACAATCTCCAACA
CCTGGACCCAGCAGGCCTTGCTGCTGTGCTCAGTCCTACGGTGTGTATTG
ATTTGTGTGCTCAGGACAAGGTTCTCTCTTTAATGAGAAGAAATACAATG
ACACTGGGCATCGACTTCATTGGCTCTACAAACATTATGGGTAATTATTT
TAAACATCAGGGTAGGTGGCTCTTGTCTCTGCTGACTAACAACTGATTGA
TCCTTTTCTGTACTTTATGTATCTTGTATTATACAAAGCATTCTCTTATC
ACTATTCAGAAACTGTCTGGAAATGCTTATTAAGCCTCAAATATTTATCA
TTCACTGTTCC
TCAGAGATGCGCGGAATTCAGAATATCCTCTGAATAATTCGTAGAAATGT
AAAAATGCCCAGCACAAGGGAAGGTACAATTCAGTGTCTGGTGTGCAGTC
AAACTGTCATGTGAAAAGACAAAAACATGGCTAACCCAGAACTGATATGG
ATACTAGGATTAGTGAATACAAATTTTGGGGTTTTTGTTTCTTTATAGAA
TCAGTAAAATTCTGACATTAAGGGAAAATTAAATATATTAATGAGCAGTA
TTGGGATACATATGTGATTTATGAACTAAGATTATGGATAAGATCAAAAG
TAAATTTCACAGTGAAGAAAAAATTAACATGTAACAGTAACTATATAAAA
GTCAGCACACAATAAAGAATAAAATTAATGTGATCTCAAACATTCTTTTT
CAACTTTGAAAATTCTAAACCTATGCAGATAGACAATCTCAAGCATACAT
AGAAAGAAACAAAACTTATCAAGACACATCAGATTTCTAAAAACTTGAAG
ATCTAGGATAAAAAATCTCACGCAGACCCACATGAGATTGATCCACCACA
GATGAATAGAAATATCAGGGTCAAGATTTTTAGCCCATGTATCAACAGAA
GCTAGAAAAGTAAAAAGAGGGAGATGGACTTTTTAATGTTTCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_h12.b1 MSMg01no066_h12.b1 CHROMAT_FILE:
MSMg01no066_h12.b1 PHD_FILE: MSMg01no066_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:16 2005
         (380 letters)



>mm_chr3_155696219_155696998
          Length = 780

 Score =  696 bits (360), Expect = 0.0
 Identities = 375/380 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagtgacagttttgagagatattgataagggagaatttagtcatagattcagagggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagtgacagttttgagagatattgataagggagaatttagtcatagattcagagggtc 260

                                                                       
Query: 61  tagtagaaagacaaaatctatctcaccaccatcagtcattttatggtgtctagtttgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtagaaagacaaaatctatctcaccaccatcagtcattttatggtgtctagtttgaac 320

                                                                       
Query: 121 ccatgttccctttgagtgaaatcacatgactttaattttctctcctcctctcctctcctc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 321 ccatgttccctttgagtgaaatcacatgactttacttttctctcctcctcttctctcctc 380

                                                                       
Query: 181 ttctcctacttcttctgattgtccagatccagtgctgtggaagtgtgtttttaaaacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctcctacttcttctgattgtccagatccagtgctgtggaagtgtgtttttaaaacaaa 440

                                                                       
Query: 241 gaaatgtcatatgctttcacactactattagagaattacccccacaatctccaacacctg 300
           |||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagggcgtatgctttcacactactattagagaattacccccacaatctccaacacctg 500

                                                                       
Query: 301 gacccagcaggccttgctgctgtgctcagtcctacggtgtgtattgatttgtgtgctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacccagcaggccttgctgctgtgctcagtcctacggtgtgtattgatttgtgtgctcag 560

                               
Query: 361 gacaaggttctctctttaat 380
           ||||||||||||||||||||
Sbjct: 561 gacaaggttctctctttaat 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no066_h12.g1 MSMg01no066_h12.g1 CHROMAT_FILE:
MSMg01no066_h12.g1 PHD_FILE: MSMg01no066_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:16 2005
         (411 letters)



>mm_chr3_155829612_155830422
          Length = 811

 Score =  787 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taattcgtagaaatgtaaaaatgcccagcacaagggaaggtacaattcagtgtctggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taattcgtagaaatgtaaaaatgcccagcacaagggaaggtacaattcagtgtctggtgt 552

                                                                       
Query: 61  gcagtcaaactgtcatgtgaaaagacaaaaacatggctaacccagaactgatatggatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 551 gcagtcaaactgtcatgtgaaaagacaaaaacatggctaacccagaactgatatggaaac 492

                                                                       
Query: 121 taggattagtgaatacaaattttggggtttttgtttctttatagaatcagtaaaattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 taggattagtgaatacaaattttggggtttttgtttctttatagaatcagtaaaattctg 432

                                                                       
Query: 181 acattaagggaaaattaaatatattaatgagcagtattgggatacatatgtgatttatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acattaagggaaaattaaatatattaatgagcagtattgggatacatatgtgatttatga 372

                                                                       
Query: 241 actaagattatggataagatcaaaagtaaatttcacagtgaagaaaaaattaacatgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 actaagattatggataagatcaaaagtaaatttcacagtgaagaaaaaattaacatgtaa 312

                                                                       
Query: 301 cagtaactatataaaagtcagcacacaataaagaataaaattaatgtgatctcaaacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cagtaactatataaaagtcagcacacaataaagaataaaattaatgtgatctcaaacatt 252

                                                              
Query: 361 ctttttcaactttgaaaattctaaacctatgcagatagacaatctcaagca 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctttttcaactttgaaaattctaaacctatgcagatagacaatctcaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)