Query= MSMg01no066_j21.b1 MSMg01no066_j21.b1 CHROMAT_FILE:
MSMg01no066_j21.b1 PHD_FILE: MSMg01no066_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:28 2005
(480 letters)
>mm_chr3_79114468_79115346
Length = 879
Score = 839 bits (434), Expect = 0.0
Identities = 467/478 (97%), Gaps = 1/478 (0%)
Strand = Plus / Minus
Query: 2 gaattctttagggaatgttacctatgcttttaccttatttcccatcagactaaaagtaat 61
||||||| |||||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct: 616 gaattctctagggaatgtgaattatgcttttaccttatttcccatcagattaaaagtaat 557
Query: 62 atacctggttagaatatcagcatttcctccacacattagagagtcataatcagcgccaat 121
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atacatggttagaatatcagcatttcctccacacattagagagtcataatcagcgccaat 497
Query: 122 gtgatacattgaagttttttttccccccatcagtcttttcttaattcctttagacacaga 181
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtgatacattgaagtttttttt-tccccatcagtcttttcttaattcctttagacacaga 438
Query: 182 cagctgagattaatgcaaagtgaagcgttcctgacagaccacttaaatgatgcatccact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cagctgagattaatgcaaagtgaagcgttcctgacagaccacttaaatgatgcatccact 378
Query: 242 ctgttggacttagacatgagcaaaaatggctaccacctgtcatataggcccttgcaaggc 301
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 ctgttggacttagacatgagcaaaaatggctaccacctgtcatagaggcccttgcaaggc 318
Query: 302 tgtaaggccccaggagcagagattgtgtgcttagtgttacagagaactcagctataatgc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgtaaggccccaggagcagagattgtgtgcttagtgttacagagaactcagctataatgc 258
Query: 362 tctaagcatgttagctcttcataaggtttatgcagcagcagcaagaaagtggtagactct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctaagcatgttagctcttcataaggtttatgcagcagcagcaagaaagtggtagactct 198
Query: 422 ctctctctctctctctctctctctctctctctctctctctctctgtgtgtgcgtgtgt 479
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 197 ctctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgt 140
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 879
Length adjustment: 10
Effective length of query: 470
Effective length of database: 869
Effective search space: 408430
Effective search space used: 408430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_j21.g1 MSMg01no066_j21.g1 CHROMAT_FILE:
MSMg01no066_j21.g1 PHD_FILE: MSMg01no066_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:28 2005
(565 letters)
>mm_chr3_78937090_78938056
Length = 967
Score = 1023 bits (529), Expect = 0.0
Identities = 557/567 (98%), Gaps = 2/567 (0%)
Strand = Plus / Plus
Query: 1 ctctgaatgcaagtctaagaagtagggtaatacggaagactctggagaaacacacgtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgaatgcaagtctaagaagtagggtaatacggaagactctggagaaacacacgtgtg 260
Query: 61 ggcaagctcagataattccaaagactttctaaagagctgaaaaattcttcagaataacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaagctcagataattccaaagactttctaaagagctgaaaaattcttcagaataacac 320
Query: 121 atcatactgaagagaaggtaatagctaccacagcacacatatgaaattgatttgaaacca 180
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 321 atcatactgaagagaaggtaatggctgccacagcacacatatgaaattgatttgaaacca 380
Query: 181 atactaaagagaatcagtcctggagtagaggcaaaacaaccaagctggtacagtctctgt 240
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 381 atactaaagagaatcagtcctggagtagaggcaaaacaaccatgctagtacagtctctgt 440
Query: 241 tatgaataataatccaaagacacacacagcacaggtacatatttttttccaggggttgaa 300
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tatgaataataatccagagacacacacagcacaggtacatattttttttcaggggttgaa 500
Query: 301 ttctgggtcctgcacatcctataacaaaaacactaccactgagctgcaaccattatttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgggtcctgcacatcctataacaaaaacactaccactgagctgcaaccattatttct 560
Query: 361 gagaattctttgaattatttcattattatgtagcaccatagaaactactgcacagtattt 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 gagaattctttgaattatttcattattatgtagcaccatagaaattactgcacagtattt 620
Query: 421 aaaccaatgtaagaggaaactatgttcaaccctatttcatcctgagcttctgttacttgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaccaatgtaagaggaaactatgttcaaccctatttcatcctgagcttctgttacttgc 680
Query: 481 tgtgctgggctgct--gttttttgaggcagtgtcttccactgttactctatctgccagag 538
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgttgggctgctctgttttttgaggcagtgtcttccactgttactctatctgccagag 740
Query: 539 ggccttattctgcatgcccgccctggg 565
|||||||||||||||||||||||||||
Sbjct: 741 ggccttattctgcatgcccgccctggg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 967
Length adjustment: 10
Effective length of query: 555
Effective length of database: 957
Effective search space: 531135
Effective search space used: 531135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
