Query= MSMg01no066_k19.b1 MSMg01no066_k19.b1 CHROMAT_FILE:
MSMg01no066_k19.b1 PHD_FILE: MSMg01no066_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:33 2005
(416 letters)
>mm_chr3_116865428_116866243
Length = 816
Score = 719 bits (372), Expect = 0.0
Identities = 405/416 (97%)
Strand = Plus / Plus
Query: 1 tctctatcatcactcttgactctgaccaagggatcacgagagagattaagtaatcatgga 60
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tctctatcatcagtcttgactctgaccaagggatcacgagagagattaagaaatcatgga 260
Query: 61 atcatatcgtatctcaaaaatgtaaggtaaaatataataattgctccaggaatgttgcta 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 atcatatcatatctcaaaaatgtaaggtaaaatataataattgctccaggaatgtggcta 320
Query: 121 agcaataagagatcactagggtaacattttcctcaaactcctccttaaagagttaataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaataagagatcactagggtaacattttcctcaaactcctccttaaagagttaataga 380
Query: 181 aatttttgtctgggtaccagtgctttgagagactgtggtatctgtttccttgaagcattt 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttttgtttgggtaccagtgctttgagagactgtggtatctgtttccttgaagcattt 440
Query: 241 tgtattttgataatgacatttatcttattctgttttacggtaagtttaaatggcaacttt 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tgtattttgataatgacatttatctttttctgttttacggtaagtttaaatggcaacttt 500
Query: 301 tctttattttgaaaaagcaccaaactttaaataggaggcaggaaagagttaaagtatttc 360
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcattttgaataagcaccaaactttaaataggaggcaggaaagagttaaagtatttt 560
Query: 361 tatgtgtctatcacagctggcaacatttgggccaaatttgcttacaaaatttcctg 416
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 tatgtgtccatcacagctggcaacatttgggccaaatttgcttagaaaatttcctg 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_k19.g1 MSMg01no066_k19.g1 CHROMAT_FILE:
MSMg01no066_k19.g1 PHD_FILE: MSMg01no066_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:33 2005
(390 letters)
>mm_chr3_117011634_117012425
Length = 792
Score = 673 bits (348), Expect = 0.0
Identities = 381/392 (97%), Gaps = 2/392 (0%)
Strand = Plus / Minus
Query: 1 cttcctgg-ataggcagaagccttattggatgccaatctcac-tataattcattgttgca 58
|||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 592 cttcctggaataggcagaagccttattggaagccaatctcacacataattcattgttgca 533
Query: 59 attggtttcaagaatgtgtataaaggtacaactcataatgttgagattttactagggggt 118
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 532 attggtttcaagaatgtgtataaaggtacaacccataaagttgagattttactggggggt 473
Query: 119 tggataacagtgccttgcacatgttcctgggttgcagtaggggaagattacatagcagca 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 472 tggataacagtgccttgcacatgttcctgggttgcagtaggggaagattacacagcagca 413
Query: 179 ggctagagcctgccaagaccttctgtgtatgctcagggctctgcccttcctctttcttag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggctagagcctgccaagaccttctgtgtatgctcagggctctgcccttcctctttcttag 353
Query: 239 tttagctatctcatactcagttgcaagcccctatgtgttcacaaccttgctgttttaaac 298
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttagctatctcatactcagctgcaagcccctatgtgttcacaaccttgctgttttaaac 293
Query: 299 cccccaaaaatgtattttaaccacagcatcctgaccgtatattgtgttgtttgctatttt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cccccaaaaatgtattttaaccacagcatcctgaccgtatattgtgttgtttgctatttt 233
Query: 359 tttaacagctcttatgaaatgaattttgtgtc 390
||||||||||||||||||||||||||||||
Sbjct: 232 ggtaacagctcttatgaaatgaattttgtgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 792
Length adjustment: 9
Effective length of query: 381
Effective length of database: 783
Effective search space: 298323
Effective search space used: 298323
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
