BAC Information

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BAC

Clone NameMSMg01-067B17
Chromosome3 (Build37)
Map Location 63,233,870 - 63,234,151
singlet/doubletsinglet
Overlap genenone
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067B17.T7 (MSMg01no067_b17.b1)MSMg01-067B17.TJ (MSMg01no067_b17.g1)
ACCAG291923AG291924
length702736
length of high quality
(start - end)
282 (74 - 355)114 (133 - 246)
definitionCHROMAT_FILE: MSMg01no067_b17.b1 PHD_FILE: MSMg01no067_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:07 2005CHROMAT_FILE: MSMg01no067_b17.g1 PHD_FILE: MSMg01no067_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATAATTTGCGGCGCTAAACGACTCCTATTTGCAGAGGATCCGCGGAA
TTCTTTCTCTTCTCCGAGAGAGAAATATGTTCAATGTGATCCACTGGCTT
TTCTGATCTTGCCTGTATATCTTCTCTGTCTGCAGACATGTCTTCCCCAC
CATGATGGAGTGGATCTCTCTGAAAATGCAAGCCAAAAACCCCCTTTCTT
CCTTATGTAGTTTTGATCAGGATATTTTGTTAGGGTTTTATGGCAGAGTA
CCTTGGTGGATTGGTCAAGGCTGAGGAATGCCACAAAGACTGAGAGGTCG
GACTGAAACTTATTCCATTTTGTAACTAGGCCTAAGTTCCAGTTTCCCAA
GGAAGCAGTTTTTTCTTCTCACCCCCCCCAAATCACAGACAATGAGCCAT
CAGTCAGCAATGGCCCTGGTATCTAAATGAGAGAGATAGCCAGCCCAAGG
ACTGATACAGTTCCTGGAATTTATAAGACCTGATGTAAAATGGTAAAACT
AATACAGCAACCAATTAGAAATGTACTAATATAACTGCTGCTTATCAAGT
CAACCATGTTTAAAATGACCTAATCATTACCGAAATTCCCCCAATTGCAC
TTAAAAGGAGTCTGCAAGCTTTGCCCAGGTCACCATTTTGTATGAGTGGC
TGACCCCTGCTTATTGGTTGTTTTCTGCATAATAAACGCTTTTTGCTTTT
GC
CGATGAAGTGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTATTTTAAGATACTAAAGTCAAA
ATGTTGTTTGGGAACAGGTATCAGAAGGCTTAGAGCAATTTGAAAAGAAC
AAGCTGAGCACATTTATTTTAATTTTTATTTATTTCTTTATTTTTTGCTT
CTGTGCAATTCCCTAAACCCCTCTTCAGGGCTGAACAAGAATAGTCAATG
GATAAAATTTGTCACAGACTAAAGAGAGATGTCTATTTGGTGTATGTGTT
ATAAACAGATACCTGATCTAATTCATAATGACAGAAAGTTTTGAAAATTG
ACATAGTAATTGTTTTTTTTTTCCGCCCCCCCCCCCCTCACGTGTTGTTT
ATGTTGCTCATTTCCTCATTTTCTTAAAGAATTAATAAAACATAAAAAGT
CTGGGAGGCGTCATTATTTGTGGAACTCCTTTGTTTGATAACCTTGTTCT
TGCCACTAAATACTTATTTTTTAACCCCCAATATTATCAACTCCTGGTTT
CATCAAAGAAATTGCCTATTATGTGCCGCATTAAAATATTATTTTTCCCT
CGTCTCTTTCACATCCATTCCTTCCTTGATCCTCCATGTATTTTACCTTT
TTCTCAGTGCCTTTTGTTCATTACCCTTTACCGCTTTTTCCCCTTACCAC
TTTTTATTTATCTTACTCCGCTTTTTTCGTCCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_b17.b1 MSMg01no067_b17.b1 CHROMAT_FILE:
MSMg01no067_b17.b1 PHD_FILE: MSMg01no067_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:07 2005
         (282 letters)



>mm_chr3_63233511_63234192
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatgttcaatgtgatccactggcttttctgatcttgcctgtatatcttctctgtctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aatatgttcaatgtgatccactggcttttctgatcttgcctgtatatcttctctgtctgc 582

                                                                       
Query: 61  agacatgtcttccccaccatgatggagtggatctctctgaaaatgcaagccaaaaacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agacatgtcttccccaccatgatggagtggatctctctgaaaatgcaagccaaaaacccc 522

                                                                       
Query: 121 ctttcttccttatgtagttttgatcaggatattttgttagggttttatggcagagtacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctttcttccttatgtagttttgatcaggatattttgttagggttttatggcagagtacct 462

                                                                       
Query: 181 tggtggattggtcaaggctgaggaatgccacaaagactgagaggtcggactgaaacttat 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 461 tggtggattggtcaaggctgaggaatgccacaaagattgagaggtcggactgaaacttat 402

                                                     
Query: 241 tccattttgtaactaggcctaagttccagtttcccaaggaag 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tccattttgtaactaggcctaagttccagtttcccaaggaag 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)