BAC Information

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BAC

Clone NameMSMg01-067E15
Chromosome3 (Build37)
Map Location 38,247,032 - 38,247,353
singlet/doubletsinglet
Overlap genenone
Upstream geneFgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
Downstream geneLOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067E15.T7 (MSMg01no067_e15.b1)MSMg01-067E15.TJ (MSMg01no067_e15.g1)
ACCAG292060AG292061
length691689
length of high quality
(start - end)
329 (40 - 368)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no067_e15.b1 PHD_FILE: MSMg01no067_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:21 2005CHROMAT_FILE: MSMg01no067_e15.g1 PHD_FILE: MSMg01no067_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCCATGGACAGTGTAGGGCTGGGAAGAGAAGCAGCTGTAGCGTTTAGTGA
CCCTTACAGCAGTAAAAACCAACCATTCCCATTATCATTGTCATAGGCTT
ACCCCAGTGCTGTTTTGCTCATCGGCTGCCTTAACTATTGTTCAAAGTTT
TCTGCCAGCTGCTATGGTAGCTTTGCCTTAGAGTGGTTCCTGGTTATGGC
TCTTACACGGGAATACGAGCTTGTTCAGCAGGCAGACTCCACACCTAGGA
TTTCACTCTCTAGAGTTTCACATAAGTCGTCCACCTGAGCTGTGTTCGGA
TTTCTCTTGTTTTCTTGCCCCCTCCCTTTTGCTCTTTATTGTAATGCCCC
CTGAACATATCTCATGTACCCGAGAATGTGCACTCTGTTCAAGATTCTAG
CTCTTCTTAACTGAACAACATTCCAGGTAGGTCCCAGGACGGGTAAACAG
GTGGTCCACAAAAAGCCTTTATTGTCTCCCTCTGTTTTGTCCGACTCATC
TACTCTTGACTGGCTAAAAATCAGCAATCAATGTACAGGCTTCTATCAGG
CTCTTCTCTGTGGTAATTCCTGAAATGACCTCTCCTCTTCCAAGACTCTG
CCTCTTTGGTGTAGCAATCCTGTTCCGTTTGTCTCAATGCA
TTCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAAGTCCAAGGACAAATGCTATAGAATGGC
TGCAGAGGGTTGTAAACCTCACAGATCCAAGGCCAGGAATTTTGGAAGAA
ATTTATGCTTTTCATGGTGGTAGTGGGGGCAGGGGTATCTCAGGACATGG
ACAAACAGACAGGTTATCCTTTCTGCCCTCTTATTCGGTCTGACTCCAAT
TCTTTAGATGGTGCCAGATCCACTGAGCTTGATGTTCCCCTAACTATCTG
CCAACTCAGGCACTAGTCTCCCCTGGATGTCCCTTCACAGACACTCAGAA
ATAATGCTTATTCAGCTGTCTTGGCTGATGGTGGTGGTACACACCTTTCG
TCCCAGGGAAGGCAGAGGCAGGCGAGTCTCTGTGAACTTGAGGCCAGCCA
GGGCTACACAGTGAGATCCTGTCTTGATATATAACCCAATCAACCCCTTT
CTGCAGATAATTGAAGTTGCTGCTCTCCTGCCGTGTCCTTAATTGACTAC
TGCCGATTTGAATGAAAAAAGCGACCTTTACATTGTATGTTCGTGTGTGT
TGTGTGTGCGAGTGTGTTGTGTTCGATGATGTTATTTTTTTTTTCATTAG
TGATTTCTTTACCCATTTTAATATTGCATTTTTATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_e15.b1 MSMg01no067_e15.b1 CHROMAT_FILE:
MSMg01no067_e15.b1 PHD_FILE: MSMg01no067_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:21 2005
         (329 letters)



>mm_chr3_38246825_38247554
          Length = 730

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%), Gaps = 1/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattccatggacagtgtagggctgggaagaga-agcagctgtagcgtttagtgaccctt 66
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 208 gaattccatggacagtgtagggctgggaagagatagcagctgtagcgtttagtgaccctt 267

                                                                       
Query: 67  acagcagtaaaaaccaaccattcccattatcattgtcataggcttaccccagtgctgttt 126
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acagcagtaaaaaacaaccattcccattatcattgtcataggcttaccccagtgctgttt 327

                                                                       
Query: 127 tgctcatcggctgccttaactattgttcaaagttttctgccagctgctatggtagctttg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgctcatcggctgccttaactattgttcaaagttttctgccagctgctatggtagctttg 387

                                                                       
Query: 187 ccttagagtggttcctggttatggctcttacacgggaatacgagcttgttcagcaggcag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccttagagtggttcctggttatggctcttacacgggaatacgagcttgttcagcaggcag 447

                                                                       
Query: 247 actccacacctaggatttcactctctagagtttcacataagtcgtccacctgagctgtgt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 actccacacctaggatttcactctctagagtttcacataagtcgtccacctgagctgtgt 507

                                 
Query: 307 tcggatttctcttgttttcttg 328
           |||||||||||  |||||||||
Sbjct: 508 tcggatttctcaggttttcttg 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 730
Length adjustment: 9
Effective length of query: 320
Effective length of database: 721
Effective search space:   230720
Effective search space used:   230720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)