BAC Information

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BAC

Clone NameMSMg01-067I16
Chromosome3 (Build37)
Map Location 119,725,390 - 119,725,642
singlet/doubletsinglet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067I16.T7 (MSMg01no067_i16.b1)MSMg01-067I16.TJ (MSMg01no067_i16.g1)
ACCAG292252AG292253
length753701
length of high quality
(start - end)
66 (47 - 112)253 (73 - 325)
definitionCHROMAT_FILE: MSMg01no067_i16.b1 PHD_FILE: MSMg01no067_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:40 2005CHROMAT_FILE: MSMg01no067_i16.g1 PHD_FILE: MSMg01no067_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGGACATCTAGGACAGCCAGAAAACCCTGTCTCAAAGAAGCA
AAAACAAAACAAACAAAAGAGGAGAGGAGAGGGAGAGGAGGGGATGGGAA
GAAGGACGACCTCCTTATCTTCTTTGTCCCCTTTTCTTTCCTATATCACA
CGATTATGTTTCTTTTTTCGACCCTCTTCTTCCCCTTCTTCTCTCCCTTT
CCCTCTCCTTTCATCTTTCCACCTTTATTTTCACCCTTCGCTTCCCGTTC
TCCCTCTATCTCCCCCCTCACCCTTTTTCCCATTACCCTTTCTCCTGCCC
CTTCAATTGCATATTTTTTTTTTTTTTTACCCCCCCCCCCCCCCGTTTGA
TATTACCCATTTCCTGCGGTTTCTTTACCCCCCCACAAAATAAAACTCTT
TCGCCGCCGGGGTTGCTTGCCCCGTCACCACCTCCTGACGCTCTACCCTC
CTATCGCCCGACTCTCCATTCTCTCACCTTTTTGTTTTGCCTCTCCCCCT
CACTCCTATTTCAATTCCCGCCCCTCCTTACTTTTTATCTCCCCCCACCT
ATTGTCACCATTCCCGTCCTTGCTCCTTTATTCCTTACGGACCCACTTTT
CCCCGCCTTCCCTTTACCATTTCCTGTTATATAAAACCGCCATCGCTCTC
TTTTCCGCTTCCTCTTCCTCTTAACCTATCTTTGTCTTTTTTTCCCATTC
TCG
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGCCTCCAGGCATAAACCTGTAGATCCC
GTGCTCTCTGGACCAGGGAAGCTGTCGGTAAGCATGGATATGTGCAAAAT
GCCAACACTGGTGAGTACAAGTAGACTGATCTTGAATTTTAGGTCAACCT
TTGTAAGACTGCGTTAATCAGATTCCCTTCTTCATGACACAGTACTCAAG
GAAGATCATTTTGAAGGATAAAAGTTTGTTTTGACCCACAGCTTCAGCAG
ATTCACTGTTTTTGGCTAATGATGCGACAGATAAATGCGTCAGTGTAAGA
TATATATTGCGTTCATAGGCAGAAAACAATGATTCACTTCTTCTAACCAT
CTATCCGCGCTGTACTAGTTACCTTTTATCGCTCGGATAACATATCATAA
CCAATTCAGCTCATGTAAGAAATTTATCTTGTGCTCATAGCTGTATATGG
TTACAGTCCATAATGTTAGGCATCCTACATATACCATGCATCTTTATTTG
CCATCTCAGATAGGCCTGGTGTATTTTTTCCGTAGCTGAGAGATCCCATC
TTAACCATAGACAACATGCACAGGACGACAATTGCCGTTTCTTTCTTACC
TTATTCCTATTCCTTTCTCTTTCATTCCCTTTTCTTGTTCCTCTCTTCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_i16.g1 MSMg01no067_i16.g1 CHROMAT_FILE:
MSMg01no067_i16.g1 PHD_FILE: MSMg01no067_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:40 2005
         (253 letters)



>mm_chr3_119725190_119725843
          Length = 654

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%), Gaps = 1/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctccaggcataaacctgtagatcccgtgctctctggac-cagggaagctgtcggtaa 59
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tgcctccaggcataaacctgtagatcccgtgctctctggacacagggaagctgtcggtaa 260

                                                                       
Query: 60  gcatggatatgtgcaaaatgccaacactggtgagtacaagtagactgatcttgaatttta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatggatatgtgcaaaatgccaacactggtgagtacaagtagactgatcttgaatttta 320

                                                                       
Query: 120 ggtcaacctttgtaagactgcgttaatcagattcccttcttcatgacacagtactcaagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcaacctttgtaagactgcgttaatcagattcccttcttcatgacacagtactcaagg 380

                                                                       
Query: 180 aagatcattttgaaggataaaagtttgttttgacccacagcttcagcagattcactgttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aagatcattttgaaggataaaagtttgttttgacccacagcttcagcagtttcactgttt 440

                        
Query: 240 ttggctaatgatg 252
           |||||||||||||
Sbjct: 441 ttggctaatgatg 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 654
Length adjustment: 9
Effective length of query: 244
Effective length of database: 645
Effective search space:   157380
Effective search space used:   157380
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)