BAC Information

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BAC

Clone NameMSMg01-067O02
Chromosome3 (Build37)
Map Location 26,448,937 - 26,606,517
singlet/doubletdoublet
Overlap geneSpata16
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067O02.T7 (MSMg01no067_o02.b1)MSMg01-067O02.TJ (MSMg01no067_o02.g1)
ACCAG292509AG292510
length711697
length of high quality
(start - end)
311 (47 - 357)276 (74 - 349)
definitionCHROMAT_FILE: MSMg01no067_o02.b1 PHD_FILE: MSMg01no067_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:07 2005CHROMAT_FILE: MSMg01no067_o02.g1 PHD_FILE: MSMg01no067_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,448,937 - 26,449,243)(26,606,242 - 26,606,517)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTATACTTCCCTCTTTCTCTAGTCCTCTAACGGTGTTTGTGTGC
CCTTTAATAACAGGGATTGTGTCTCTGTCTCTGTACTTTTTGGCTGGAAT
CAATGTGAACGCTGAAACCTCCTTTGCTCTTTGTAACAGACAGACACCCA
CCACGTGTGAACAGAAATGGAGACTTACTGATGCAAACAAACAAACAAGA
TCCGTCTTATTTCTGGAGACCAAAATCTATAATCAAACAACACTTCAGAC
TACTGTTACTACAGTGCTCCTTCACCCATGGCATCATAAGGAAATTTAAA
ATAGTAAAGCTAATACATGCATCCACGACATTCAAATTTCCTAATTCAAA
CCATGAGAAACATTCTCTCTATGAGATCATTTCAACTATCAGTTTGAGCT
GGCACATGTGAATATTCTCCCACAACCTGGAGGTAATTGCCCAATGTATA
TTAACTCTCTTTTTTTATCTCTACACTAGCGCCTTTCTTGATCGCAGCCC
TTTTCCTTATCATACATCCTTTTTTCCCTTGCCTCCTTTGCCCTTTTTTT
TTTCTTCCCCCTTGTTCTCGCCCCGTACCTTAACTTCTCTATTATAAATC
TCCTCTACGCAATATAATGAATACACTCCATTCAATCTGTTTTTTTCTGT
TTCCATTTCCG
TCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGAACACTGAGTCCTCTTCAGAAGC
ATGACAGAGCAGTGCTTTTACTCCATCCCAACATTCTGCAGCTAGGCATC
CCCTCCCTTCCCATTTCTGCCTCCACCAGAAGTGTCTAACTGTGCTCCCA
TAGTGCATGTGTTGCAGGATAGTGACAAATGAGGTCCAATGTGTGCTTAG
GTGACAATACCAAATTACAGCATCAAAAAATGGGAATACCTGACTCTATA
ACTTCAATCACAGGTTTTTCTTCATGTTCGTAGTCAATCAGTGACATGGG
CCACTTTGTTAAACATCCTTCTACAGCCCACCTCTCTTGTTACTAGTACG
TGTGTATACATAGCCCCTAAGAACCCTGTTTAGCATTGTGGCCCTCAACA
TGTCTTTTCTGCTGCTTTAAGTTACCCTGAGTAGCTTGTTTCTAGAGTGT
TAACACCTATGGTGTTTGTCAGCTGGCACGATTTTCGCCTTCCCATATTT
TTCCTTGACTTGTTCTGCTACAGAGTATCCACAGTATTATATTCTGAATC
CAGACTGACGTTCTTTGATAATTGTTCTCACATACTGCCTATTTTATCCT
GTGCCTGCATTCATGCCATTAAGTGCCCTTATTTGTCCCATATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_o02.b1 MSMg01no067_o02.b1 CHROMAT_FILE:
MSMg01no067_o02.b1 PHD_FILE: MSMg01no067_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:07 2005
         (311 letters)



>mm_chr3_26448733_26449443
          Length = 711

 Score =  594 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctatacttccctctttctctagtcctctaacggtgtttgtgtgccctttaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctatacttccctctttctctagtcctctaacggtgtttgtgtgccctttaataa 264

                                                                       
Query: 65  cagggattgtgtctctgtctctgtactttttggctggaatcaatgtgaacgctgaaacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagggattgtgtctctgtctctgtactttttggctggaatcaatgtgaacgctgaaacct 324

                                                                       
Query: 125 cctttgctctttgtaacagacagacacccaccacgtgtgaacagaaatggagacttactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctttgctctttgtaacagacagacacccaccacgtgtgaacagaaatggagacttactg 384

                                                                       
Query: 185 atgcaaacaaacaaacaagatccgtcttatttctggagaccaaaatctataatcaaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgcaaacaaacaaacaagatccgtcttatttctggagaccaaaatctataatcaaacaa 444

                                                                       
Query: 245 cacttcagactactgttactacagtgctccttcacccatggcatcataaggaaatttaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacttcagactactgttactacagtgctccttcacccatggcatcataaggaaatttaaa 504

                  
Query: 305 atagtaa 311
           |||||||
Sbjct: 505 atagtaa 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no067_o02.g1 MSMg01no067_o02.g1 CHROMAT_FILE:
MSMg01no067_o02.g1 PHD_FILE: MSMg01no067_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:07 2005
         (276 letters)



>mm_chr3_26606042_26606717
          Length = 676

 Score =  487 bits (252), Expect = e-142
 Identities = 270/276 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaacactgagtcctcttcagaagcatgacagagcagtgcttttactccatcccaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 476 tcagaacactgagtcctcttcagaagcatgacagagcagtgcttttagtccatcccaaca 417

                                                                       
Query: 61  ttctgcagctaggcatcccctcccttcccatttctgcctccaccagaagtgtctaactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttctgcagctaggcatcccctcccttcccatttctgcctccaccagaagtgtctaactgt 357

                                                                       
Query: 121 gctcccatagtgcatgtgttgcaggatagtgacaaatgaggtccaatgtgtgcttaggtg 180
           ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 356 gctcccacagtgcatgtgttgcaggacagtgacaaatgaggtccaatgtgtgtttaggtg 297

                                                                       
Query: 181 acaataccaaattacagcatcaaaaaatgggaatacctgactctataacttcaatcacag 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 acaataccaaattacaacatcaaaaaatgggaatacctgactctataacttcaatcacag 237

                                               
Query: 241 gtttttcttcatgttcgtagtcaatcagtgacatgg 276
           |||||||||||||||||||| |||||||||||||||
Sbjct: 236 gtttttcttcatgttcgtaggcaatcagtgacatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)