BAC Information

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BAC

Clone NameMSMg01-068F22
Chromosome3 (Build37)
Map Location 140,194,777 - 140,195,073
singlet/doubletsinglet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068F22.T7 (MSMg01no068_f22.b1)MSMg01-068F22.TJ (MSMg01no068_f22.g1)
ACCAG292880AG292881
length733730
length of high quality
(start - end)
291 (79 - 369)300 (73 - 372)
definitionCHROMAT_FILE: MSMg01no068_f22.b1 PHD_FILE: MSMg01no068_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:47 2005CHROMAT_FILE: MSMg01no068_f22.g1 PHD_FILE: MSMg01no068_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAACGCGGAA
TTCCTGAGTGTGTGGTCTCGTAAAACTCTGGTTCTTCTTCCTTCTCTTGA
ACTCTTCAGTATGTTTGTTTTGTCTGCTCTCTAATGTATTAGCTTTTGCT
TTATCCTTATATATTATTATATTAACTATACTATTTTTAATCATATTATA
TTATATTTTTAACTCTGATTGTTTTCTAATCAGAGGCAGGAAGAGAGTGG
ATCTGGTTGGCAGGGTAGGTGAGGAAGAACTGGAAAGAGCAGAGTGGGAG
GAACCCTTAGTGAGAATATATTACATGTTTTTATTTTTCTATTTAAATAT
CAGGAAAAGGAAATTTTTGTTTTTTTTTCTCACCCCGCACCTTCTTGTAG
AAGAGAACGGATTAAATGGAACAAGCTAGTGAGTGTTGCAAAAACATAAG
GGGGACTGGGTGACAAAGGTTGGTAGTGAGAACATTAAGGGATAGGTAGG
GAATCAAACAGCTGAAATTAAGCAGAGGGCTTAGAAACCGCAGATGCTGT
GTGAGGTGTTTGTTGTCAACTCACTGAAAGTCTGAGTTACTATATCAAAG
TCTTCATACCATGTTTAAAAATGTAAAAACTGAAGCATAAAGTTGACAGA
ACAAGTTATAGAGACTAAGGCAGACCTTGTACTAAACTCAGATCTGCACT
TGTTAAAACCTCACCTTCTGCTGTACAGAAAAA
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTGCTTCTTTTTAGCAGAGGAACTTA
CTGGAGATCATTAAATACTTGCGACAACTCAAGAGGAGCTGAAGAAACAG
CTGTCTCTGGCTCGATATTTCCGGAACTATTACCAAAATACCCTTCAGAA
CTGAGCTGCCAGAAATGCTGCTGTTTCTTTTTTGATTGGCAAAGAAGCTA
TATAGAGCACTGTGATGCTACTGAGTCACACTCTGACTCCTGCAGTAGTC
ATGCGCTAAATCGATGCTTGAGCTCTGCCCCTTCCCCACAAAATCTAGCT
GTAAGTGCAGTTTTCTGAATTATGCTGGATGCGCAACACATTATATTGGA
AAATCTGTGTTCAGATAAGAGAAAAGAAAATTTACAGCTATTGTGTCATA
GAAGGAAGTTAGAATGGGTACTGTGTATTCAAAATCTGTTTCTATTATAG
TTCAACAATTTTGGTATTTATCAAGCTATTTTCATTCTTAGAGTTTGCAA
CGGTAGTTAATAACACTATGTGTCTTTCTAAAAATAAGAATCTCCTTCAT
ACAAAGGAGATGGTACACAAGTTTTAATGACAGTACATGGTAGACATTGT
TCTTTTCCCTTCTAGTTCAATCTAAATGCCCTGGCACAACTCTTAAATTT
AGCTAAGAATAAATATTAGNAAATTAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_f22.g1 MSMg01no068_f22.g1 CHROMAT_FILE:
MSMg01no068_f22.g1 PHD_FILE: MSMg01no068_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:47 2005
         (300 letters)



>mm_chr3_140194577_140195276
          Length = 700

 Score =  559 bits (289), Expect = e-164
 Identities = 295/297 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgcttctttttagcagaggaacttactggagatcattaaatacttgcgacaactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atttgcttctttttagcagaggaacttactggagatcattaaatacttgcgacaactcaa 438

                                                                       
Query: 61  gaggagctgaagaaacagctgtctctggctcgatatttccggaactattaccaaaatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaggagctgaagaaacagctgtctctggctcgatatttccggaactattaccaaaatacc 378

                                                                       
Query: 121 cttcagaactgagctgccagaaatgctgctgtttcttttttgattggcaaagaagctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttcagaactgagctgccagaaatgctgctgtttcttttttgattggcaaagaagctata 318

                                                                       
Query: 181 tagagcactgtgatgctactgagtcacactctgactcctgcagtagtcatgcgctaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tagagcactgtgatgctactgagtcacactctgactcctgcagtagtcatgcgctaaatc 258

                                                                    
Query: 241 gatgcttgagctctgccccttccccacaaaatctagctgtaagtgcagttttctgaa 297
           ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 257 gatgcttgagctctgccccttccccaccaaatctagctgtaggtgcagttttctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)