BAC Information

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BAC

Clone NameMSMg01-068M09
Chromosome3 (Build37)
Map Location 87,479,277 - 87,479,563
singlet/doubletsinglet
Overlap geneArhgef11
Upstream geneLrba, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801
Downstream geneEG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068M09.T7 (MSMg01no068_m09.b1)MSMg01-068M09.TJ (MSMg01no068_m09.g1)
ACCAG293189AG293190
length698704
length of high quality
(start - end)
317 (47 - 363)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no068_m09.b1 PHD_FILE: MSMg01no068_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:19 2005CHROMAT_FILE: MSMg01no068_m09.g1 PHD_FILE: MSMg01no068_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACATCAGACACCCCAATCCCACTCATCTCCCTCTCCCCTTGTA
TCTGCCCTCCACCCTTGCACCTTGGAAGCTGTACTGTGTCACGGTGTATC
CAACAGCATACCGTTTGCCCACACATCTTTGCTTGAGAATGTTTACTGCA
ATGACTCATTGGTCTGGTACGAGACCTCTGACTTCTGCTACTCTTGAAAG
AAAGATGAAATTTCAAGACCTGTAAGTCATATAAAGTACTCAGAAATTGC
TGGTTGTTTGTGAGCCTAGAGGCTTCCTGGGGATGAGAAAAAAGAAAAAC
AAACCCGGTCATGTTTTTTACTCCCCCCACCTCCTGGGAACAGCTTGACC
ATAAAGATAAAGAGGAATGTGAGGACATAACAAGACTATCTGAACTGAGT
CAACAACTCACAGAACTCTGACACCCTGCACGTACATGTAATTTTTCTGC
TGATGTTTGCATAAGCCAATAGTGTGTTGCTATATTGAATTCCCCACCCC
TAAGCCCTTTACCCCATAAAACCCCCTAGCTTTCGAGCCTTGTGGCCGAA
TCCACTGTCTCCTGCGTGAGACATGTTTCAACCCAGAGCTCCATCATTAA
ACTACCTCATGTGCTTACAGCATGAAGGATTCTCGTGCTTCTTTTGGG
AACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTATACACTAATCAGTGA
AGCATCTGCCAAACAGGCAAACACACGTTCAAGTGCACTGGAAGCTACAA
ATTAGATCCAAGGAATGATTGGCATGTGTTAAATGGATTTACCCAGAGCA
CCCCGGAAAGGGTAGGATTCTGACAGCGGCTCTGTTGACATGCAGGGAAG
GAAAGAATGTGTATAGGCACAGAAAAAAGTAAAAGACACAGCAACCTTGT
CGAGCTGTCAATGCCATTGCAATATTGATAAAAAAGCAAAAGAATTAAGC
AAGAAACAGGACTAATTTTATCTCCCCCCACCCCACCCTTTCAGCCTGTT
CTGCTGTTATTAGGAGTATCTTAGAAAACCTCATATATAAATTCAAGTCT
ATTTTTCTACCTAAATAATATGGATAAATGTTTCACTTGTTCGGGTCTTC
CTATGTCACATGGCAGCTGTGAGAACTAAGTGAGATCCAGTATGTCAAAG
GCCCTGCAAACTGGATAGCAACCCAGCGACCTTAGGAAGCATAATGCCAT
CAGGACTGGGTCAGGTCGCACACATACAATCTTTACATGTGAGGGTTCCG
GATTTTACTTATATGAATAGCACTATCTAGCACGACCAGATATACCTTTA
ATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_m09.g1 MSMg01no068_m09.g1 CHROMAT_FILE:
MSMg01no068_m09.g1 PHD_FILE: MSMg01no068_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:19 2005
         (287 letters)



>mm_chr3_87479077_87479763
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcctatacactaatcagtgaagcatctgccaaacaggcaaacacacgttcaagtgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtcctatacactaatcagtgaagcatctgccaaacaggcaaacacacgttcaagtgcac 428

                                                                       
Query: 61  tggaagctacaaattagatccaaggaatgattggcatgtgttaaatggatttacccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tggaagctacaaattagatccaaggaatgattggcatgtgttaaatggatttacccagag 368

                                                                       
Query: 121 caccccggaaagggtaggattctgacagcggctctgttgacatgcagggaaggaaagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caccccggaaagggtaggattctgacagcggctctgttgacatgcagggaaggaaagaat 308

                                                                       
Query: 181 gtgtataggcacagaaaaaagtaaaagacacagcaaccttgtcgagctgtcaatgccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgtataggcacagaaaaaagtaaaagacacagcaaccttgtcgagctgtcaatgccatt 248

                                                          
Query: 241 gcaatattgataaaaaagcaaaagaattaagcaagaaacaggactaa 287
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcaatattgagaaaaaagcaaaagaattaagcaagaaacaggactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)