BAC Information

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BAC

Clone NameMSMg01-068N16
Chromosome3 (Build37)
Map Location 53,660,220 - 53,660,517
singlet/doubletsinglet
Overlap geneUfm1
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155
Downstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N16.T7 (MSMg01no068_n16.b1)MSMg01-068N16.TJ (MSMg01no068_n16.g1)
ACCAG293251AG293252
length725731
length of high quality
(start - end)
321 (43 - 363)298 (72 - 369)
definitionCHROMAT_FILE: MSMg01no068_n16.b1 PHD_FILE: MSMg01no068_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:26 2005CHROMAT_FILE: MSMg01no068_n16.g1 PHD_FILE: MSMg01no068_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAA
TGCTTTTTCTGCATCTAACGAGACGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCC
TGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTAAT
GTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGA
TATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTC
TGTGGTTTAGGTATTTTTTTATTACCGCCCCTCCTAAAATGAGTTGGGTA
GAGTACCTTCTACTTCTATCTTGTGAAATAGTTTGAGCAGAACTGGAAGT
AGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCC
TGGGCTTTTTTTGGTTGGGAGACTATTATTAACTGCTTCTATTTCTTTAG
GGGATATGGGACTGTTTATAAGGTCAACTTGATCCTGATTTCACTTTTGT
AACCTGGTATCTGTCCTGAAATTTTTCCATTTCGCTCCAGGTTTTCAGTT
TTTTTGGACATAAACTTTTTTAAAAAGATCTGAATGAGTTTTGAATTTCT
TCAGAACTGGTTTTTATGTTCCCTT
GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATAAATAATGTCTTCAGGACCAGTTTTTA
TCTTGTGTCTCATAGTCCCTATTACCGGGCCTTACTTGATTTGGAGGTGT
GGCACTTGTAAGAGAATTAGGAATTGGCATCTGAAGGGCTGTCTTAATAG
ATGAAGGAATTGTCATTGTCCACAGGTTTGTGGAGCACATTCTGGGGTTC
AGAATTATGTAGCAATACACACCTCATGTTTGCTGGGTTTTTATGTTTAT
GTCTAGTGCCCAGAGACCTTATTCCATATACTATTAGGCTTCTGTTAGCC
AGACATTTGAAAATATTTGTTACTTACTTACGCTTACTCTTAAATTTCTT
CCATTCTGCCTTTGCACACACAATAAAAAGTTCATATTATTGGTACAGAA
ATAGACACATTTGATCATTGGAATCAAATTGAAGACCCAGAAATAAATTC
ACATACTTATAGACACTTGGTTTTTGAAAAAGAAACCACAACTATACAAT
GGAAAAATGAACGCTTCTCCCAAAAATGGTGCTGCATGTCTACTTGACTA
AGTATGAAAACAGATCTGTTTACCTCACCCCTGTACAAAACTTGATTCCG
AGCTGGTCATAGACCTCAATATCAAACTGGATACTTTGAATCTCCTAGAA
AAGAAAGCGGGAAATTTCTGTTCTATACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n16.g1 MSMg01no068_n16.g1 CHROMAT_FILE:
MSMg01no068_n16.g1 PHD_FILE: MSMg01no068_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:26 2005
         (298 letters)



>mm_chr3_53660020_53660717
          Length = 698

 Score =  530 bits (274), Expect = e-155
 Identities = 292/298 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaataatgtcttcaggaccagtttttatcttgtgtctcatagtccctattaccgggcc 60
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 498 ataaataatgtcttcaggaacagtttttatcttgtgtctcatagtccctattacagggcc 439

                                                                       
Query: 61  ttacttgatttggaggtgtggcacttgtaagagaattaggaattggcatctgaagggctg 120
           ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 438 ttacttgatttggagatggggcacttgtaagagaattagggattggcatctgaagggctg 379

                                                                       
Query: 121 tcttaatagatgaaggaattgtcattgtccacaggtttgtggagcacattctggggttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcttaatagatgaaggaattgtcattgtccacaggtttgtggagcacattctggggttca 319

                                                                       
Query: 181 gaattatgtagcaatacacacctcatgtttgctgggtttttatgtttatgtctagtgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 318 gaattatgtagcaatacacacctcatgtttgctgggtttttatgtttctgtctagtgccc 259

                                                                     
Query: 241 agagaccttattccatatactattaggcttctgttagccagacatttgaaaatatttg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agagaccttattccatatactattaggcttctgttagccagacatttgaaaatatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)