BAC Information

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BAC

Clone NameMSMg01-069D02
Chromosome3 (Build37)
Map Location 63,682,587 - 63,682,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676984, LOC666967, Mme, Plch1
Downstream geneLOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069D02.T7 (MSMg01no069_d02.b1)MSMg01-069D02.TJ (MSMg01no069_d02.g1)
ACCAG293509AG293510
length796794
length of high quality
(start - end)
172 (107 - 278)127 (134 - 260)
definitionCHROMAT_FILE: MSMg01no069_d02.b1 PHD_FILE: MSMg01no069_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:52 2005CHROMAT_FILE: MSMg01no069_d02.g1 PHD_FILE: MSMg01no069_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTCCCCTCCTCTTTTCCCCCTCCCCTTCTCTTCCCCTCTCTCCTCT
TTCTTCCACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTATGACTCGCCCATGAACTAGCTAGTTATTTC
TTTCCAAAAGGAGATCAGGTGCGTAGGCACTGCATTTTAATTTCTGCCTA
GATCCTTGTGTCCTGTTCCTGTTTTTAGCAATTTGAAGGCATGAGCCAGT
GAGGTTTTTTTGTTTTGTTTTGTTTTGCTTTGCTTTGTTTTACGATGAGG
CCTGCCTAGTAACCTTGCCTTTGTATAGCACACTTACTCAAATTTCATTT
TAAAACTGCATCTCATCATCTCATACGTATAGATTTCACACTTCGCACGT
TTCCATTCCATTCCATGTACTTTTTTTTCTCCCGCCCCCCCCCCTAATCA
TACTTTTAAAATACAACGCCCATTGTACGAAACCAGAAACCTTTTCTCTC
CTTCTTGTTCTGCGCTTGACATGCCCCCTAATCCTATTAGCTTTTACCAC
TCGATGTTGCTGAGTGACTTCTCCTCATGTCTACTCCTATTCCCCTTTCT
TTTACCCATTTTCTCTTATCCCCTCTTTTTTACTTTTTGTTTACTTTTTG
TCCCTGTTCACCCCCCCCCCCTTAGTTCCACATCAACGCCACCTTTTTTA
TTCTTTTTCGCCCCTTTCACTCCTCTTTTCTTTTTTTCTCCTTTTACCCA
CCTGTTTCCGATTTCTTATTGTTTTCCTCATGTCAACACCACCCTC
NTTTTTCTTTTTTTTTTTTTTTCTTTTTTTTCCCCCTTTTCCCCCCCCCG
CATTCTTTTCCCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGA
CTGGGAGGAAGAAGCAGCTCATTATGAGAACAAAGGGTACCAGCCAGGTA
AAGTGCTAGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAG
TTTGCTGATTGTCCTCAGGGCAGTCGGTTTCAAGGTCTGCCCTATGCGGA
GTCCCCGCCCTGTGTATTGCGTCAGCCCTGCGCAGACAGGTAGCGCGCTT
AGAGCCAGCGTGCAGACTCATTCATTCCCATAGAGGACCATAGGACTATA
CCACAGGCATTTCCGGTCTTTGTTTTGACCCCACTTTGGTTGTTGTCCTC
GTTCCGGCAGTATACTTATCCATTCCACAAATTGTCGAGTTTTTTTCGGA
CATACGTGACCCATTGCCAATTTTACCTTGTTGTTATCTATATCAGGCTT
GTTCTCTATGGTACTTATTTCCTGTCGAACCGTTTTTTCCCCCGTTTCCT
ACTTGTTTTTTTTCCCTTATGTGTCCAATTCCCAGCTTTTGTTATATCTT
TCTTTGTCACGTTTCTTGCCCCTCTTTTTTCTCCCTTGCTCCCCATCTAT
TCCGCTTCCCGTCTTCCCCCATTTTTTTATTTCCGCATCCCTTTTGTTTC
CTCCTCCCGTGTTTTGGCTCATTTTCTTTCCCCCCTCCTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_d02.b1 MSMg01no069_d02.b1 CHROMAT_FILE:
MSMg01no069_d02.b1 PHD_FILE: MSMg01no069_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:52 2005
         (172 letters)



>mm_chr3_63682405_63682975
          Length = 571

 Score =  302 bits (156), Expect = 9e-87
 Identities = 165/168 (98%), Gaps = 1/168 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttatgactcgcccatgaactagctagttatttctttccaaaaggagatcagg 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggaattctttatgact-gtccatgaactagctagttatttctttccaaaaggagatcagg 291

                                                                       
Query: 64  tgcgtaggcactgcattttaatttctgcctagatccttgtgtcctgttcctgtttttagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgcgtaggcactgcattttaatttctgcctagatccttgtgtcctgttcctgtttttagc 231

                                                           
Query: 124 aatttgaaggcatgagccagtgaggtttttttgttttgttttgttttg 171
           ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 230 aatttgaaggcatgagccagtgaggttgttttgttttgttttgttttg 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 571
Length adjustment: 8
Effective length of query: 164
Effective length of database: 563
Effective search space:    92332
Effective search space used:    92332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)