BAC Information

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BAC

Clone NameMSMg01-070A14
Chromosome3 (Build37)
Map Location 123,125,267 - 123,125,475
singlet/doubletsinglet
Overlap genenone
Upstream geneBcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik
Downstream genePrss12, EG668804, Ndst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070A14.T7 (MSMg01no070_a14.b1)MSMg01-070A14.TJ (MSMg01no070_a14.g1)
ACCAG294153AG294154
length824646
length of high quality
(start - end)
---210 (143 - 352)
definitionCHROMAT_FILE: MSMg01no070_a14.b1 PHD_FILE: MSMg01no070_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:57 2005CHROMAT_FILE: MSMg01no070_a14.g1 PHD_FILE: MSMg01no070_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGGGGGGGGGGGGGAGGGGGGGNGTTTTTTCTTCNNNAAAAANNNNNNN
NTGTGGGGGGGGGGGTGGGCGGGGGGGTAGGGGGNNCCTGTTTCTCCTGG
TAGTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCATAGGC
ATCCGTCTTTAATTTCTTTAGTGTTACCGCCAGGCCAGCTTCTTATTCTC
AGCATACTCATTATATACATTCTCTCTTCTCTGTTTCTAATGTTTCTTTC
CACCAATATCTTTCTCTTTGCATTGGCAAAAATGGTATCTTTCTTGTAAA
AAGAATGGCTTGCCAATATTCCTTGTTCCTTTCTACAAGTCATTCTCTCC
ACAATGGCTCAATCCTCTGGCTTTATATATATAATTAATGATACAAACCA
TTATTGTAACATGGAGGTATACTTCTGCATAAGCCCCTAGGTGTTTCTGT
AGCCTACAGCAGTTATGTACTACAATCATAGCATATTTTTGCGTACAACC
TTCGTATCATAATTGCTTTGTGTTCTTCCACATATTTTGCCACACAAGCT
TATATATGGTGTAGCACTATAAGCACCGTGGTATAGCCACCTATGTTTTA
ACGTATTTTGCAATTTTTTCCCTCTTGTTAGCGGCAAAATATATTTTATC
TTGGGCAATTTTTCGGTAAAATAGGGTAACGCCTTTTTTCCTCCTTTTTT
TTCCTCCACCTCTTTACAACCCCACCTTATTTCCTCCCTCCCCTAGTCCG
CCCCCTCCTTGTTCCCCTCCTTTTTTTTCCTATCTTTTTTTTCCCTTTTC
TCTATTTCCCTTCTTGGTAAATGA
TTTTTCTTTTTTTCCTTTTTTTATCCACTATCTTGTATACACACTTAACA
ACTCTTCCCTTNNTTTTTTACGATGATATGGTAXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGACTG
AGTACAGAGAAGAGTGTGGTAATTAGAAGGACGCCAAATAATTTTCCAGT
ACTTAGTGTCTAAAACCGCCTCGGAGAGTCCCTTTATGTTACCCGTATTC
CCAGTAAGAAGTGGTAACAGATAAAATAGATTGACTACAACCGCAGACAG
ACTTCAACAACCATGCAAAGTTTCATAAATGGCAATGTGAGTAGAAATAA
AGCTTGGTTGGGTACCTTTACTCCAATACTGCATGATGGTGCCCCTGCCT
GGGGAGTTTTCTATCACGCCAAGGTCTTGGGCCAATTTTTTCTTTTCTTC
TTCTGCACAATGCCATCGCCTCTTTCTTTTTTTCTTCTTAACAATTCCTA
CGGAAAAAATAATTTTTCCTTACATCAGCACTTTTTCTTATAAATATTTG
CCATCATTCTCAGATAATCTATCCATTTAATAAAATGGCTATCATTGTCA
TTGGTTGTGGATCTAAGTGTGTACCCCCCTTGGTTGTTGGTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_a14.g1 MSMg01no070_a14.g1 CHROMAT_FILE:
MSMg01no070_a14.g1 PHD_FILE: MSMg01no070_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:57 2005
         (210 letters)



>mm_chr3_123125067_123125675
          Length = 609

 Score =  375 bits (194), Expect = e-109
 Identities = 206/210 (98%), Gaps = 1/210 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggactgagtacagagaagagtgtggtaattagaaggacgccaaataattttccagtac 60
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 409 atggactgagtacagagaagagtgtggtaattagaaggatgctaaataattttccagtac 350

                                                                       
Query: 61  ttagtgtctaaaaccgcctcggagagtccctttatgttacccgtattcccagtaagaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttagtgtctaaaaccgcctcggagagtccctttatgttacccgtattcccagtaagaagt 290

                                                                       
Query: 121 ggtaacagataaaatagattgactacaaccgcagacagacttcaacaaccatgcaaagtt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggtaacagataaagtagattgactacaaccgcagacagacttcaacaaccatgcaaagtt 230

                                         
Query: 181 tcataaatggcaatgtgagtagaaataaag 210
           ||||||||||||||||||| ||||||||||
Sbjct: 229 tcataaatggcaatgtgag-agaaataaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 609
Length adjustment: 9
Effective length of query: 201
Effective length of database: 600
Effective search space:   120600
Effective search space used:   120600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)