BAC Information

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BAC

Clone NameMSMg01-070B23
Chromosome3 (Build37)
Map Location 64,865,427 - 64,865,940
singlet/doubletsinglet
Overlap genenone
Upstream geneEG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070B23.T7 (MSMg01no070_b23.b1)MSMg01-070B23.TJ (MSMg01no070_b23.g1)
ACCAG294218AG294219
length680690
length of high quality
(start - end)
556 (45 - 600)512 (72 - 583)
definitionCHROMAT_FILE: MSMg01no070_b23.b1 PHD_FILE: MSMg01no070_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:04 2005CHROMAT_FILE: MSMg01no070_b23.g1 PHD_FILE: MSMg01no070_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTATATTCCAGAAATCCGCGGAATTCTCACCTGATGACTACCGAA
TGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAAATCATTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGAAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAACCTAAGATACCCCAGATATAAGATACC
ATTTCCTTAACAAATGAAACTCAAGATAAA
TCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGACAGCTTTGGCGAGATAAAGAAGAT
CTTTCCCCAAGAACCAACACAACGAAAGTAACTACATGGTGGTCAATTTG
CTTTTTTGTTTTGTTTCTACTTTTTTTTTCAATGCATTTGTTTAAAAAAT
CAACCCCCCTCTGCTCAGTAATTGGAATAATTTCACATTTTATGGAATGA
AATTTGTGTTTAGAGTTGAAGATAAACTTGATAAAGACTCGAGCTAAATT
ACTGTAATTTTACCTTTGTTAAATATTAACAGGAAACGCTAAAAAATAAT
AAATTCTTGGAGTTGTGATATTGGAGAATAAAAAAATCATTCCCACCTCA
ATGTCAGCTCAAAGTTTGGACGCTACCCCAGTTCCAGAGAACTTCCAATG
CTTAGGCATAGGTCATACCAATCAGTGACACATCTGCCAGCTGAGCTGCT
CTACTCCCCAGATTCAGTCCTCAAAGACACACTCCACCACTGTCCCTGTG
CCCCCATACACCTTACTACCCACCCTACTGCCAGACCTCTGCCACCAACT
CCTTCATGAAGCCTTCAGTTGCTCAAGTACAGGCCACACCCAACCAAAGA
ACAGTGACTCCCTGTTACACCAAAGCTAGGCTAGTTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_b23.g1 MSMg01no070_b23.g1 CHROMAT_FILE:
MSMg01no070_b23.g1 PHD_FILE: MSMg01no070_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:04 2005
         (512 letters)



>mm_chr3_64865227_64866140
          Length = 914

 Score =  963 bits (498), Expect = 0.0
 Identities = 510/514 (99%), Gaps = 2/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagacagctttggcgagataaagaagatctttccccaagaacc-aacacaacgaaagta 59
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 714 caagacagctttggcgagataaagaagatctttccccaagaaccaaacacaacgaaagta 655

                                                                       
Query: 60  actacatggtggtcaatttgcttttttgttttgtttctactttttttttcaatgcatttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 actacatggtggtcaatttgcttttttgttttgtttctactttttttttcaatgcatttg 595

                                                                       
Query: 120 tttaaaaaatcaacccccctctgctcagtaattggaataatttcacattttatggaatga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tttaaaaaatcaacccccctctgctcagtaattggaataatttcacattttatggaatga 535

                                                                       
Query: 180 aatttgtgtttagagttgaagataaacttgataaagactcgagctaaattactgtaattt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aatttgtgtttagagttgaagataaacttgataaagactcgagctaaattactgtaattt 475

                                                                       
Query: 240 tacctttgttaaatattaacaggaaacgctaaaaaataataaattcttggagttgtgata 299
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tacctttggcaaatattaacaggaaacgctaaaaaataataaattcttggagttgtgata 415

                                                                       
Query: 300 ttggagaat-aaaaaaatcattcccacctcaatgtcagctcaaagtttggacgctacccc 358
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttggagaataaaaaaaatcattcccacctcaatgtcagctcaaagtttggacgctacccc 355

                                                                       
Query: 359 agttccagagaacttccaatgcttaggcataggtcataccaatcagtgacacatctgcca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agttccagagaacttccaatgcttaggcataggtcataccaatcagtgacacatctgcca 295

                                                                       
Query: 419 gctgagctgctctactccccagattcagtcctcaaagacacactccaccactgtccctgt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gctgagctgctctactccccagattcagtcctcaaagacacactccaccactgtccctgt 235

                                             
Query: 479 gcccccatacaccttactacccaccctactgcca 512
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gcccccatacaccttactacccaccctactgcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 914
Length adjustment: 10
Effective length of query: 502
Effective length of database: 904
Effective search space:   453808
Effective search space used:   453808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)