BAC Information

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BAC

Clone NameMSMg01-070E10
Chromosome3 (Build37)
Map Location 113,500,913 - 113,501,493
singlet/doubletsinglet
Overlap genenone
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneCol11a1, LOC100043220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070E10.T7 (MSMg01no070_e10.b1)MSMg01-070E10.TJ (MSMg01no070_e10.g1)
ACCAG294336AG294337
length634654
length of high quality
(start - end)
---581 (74 - 654)
definitionCHROMAT_FILE: MSMg01no070_e10.b1 PHD_FILE: MSMg01no070_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:17 2005CHROMAT_FILE: MSMg01no070_e10.g1 PHD_FILE: MSMg01no070_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTACCAAATTGTCGAGGATCCGCGGAATTCTTTTGCATTTACTTTACA
ATAGATAATTATATGTTGACCTTCTTTTTTAGATCTGACCTGTATCCTCC
ACACTCTTCAAACTATTACTTCACAAAACATGATAATTATTACTAGAATC
TAACGCAAATTCCTTTGCACCTAACGAATGCCCACATGTGAAAACGTATC
CACCCCATCCAACTGCATCTGCAGTTTGATCTTCTATTACAGCATATCAT
AACGTCTTATCTTATATAGTATGTCTATCACTGAAAGCGAATTCTTCTAG
TTTCACAAATGCGAGTGAGACGCACTAATGTTGACGTAGTCATCATCCTG
TACGCAGTTACAAAACGTCGGCTACTCTTAACTATCTTCAGTACTATAGC
ACATTGATGCATAATGAAATCCAGATGCCACCTATGGCAATTATGAATAC
TAGAAAACACCTGTTACCATATATAACAGTATAACAAATCTAGTGTCCCG
TAAGATGCTGTCTCATGCTTTGACTAATTTCTGCTGCCTCTTGAGTTTTG
TACCATAATACTTGACCTAATTGATCAATGAATTATAGACTCAAGCTCGT
GAACTTACATAGGCTTTACTACCGTCATAAGTCA
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGATTTAGCTGGTCCTTGATCAAGAA
AACAAAACGAAGCAAAACAAAATAAACAAACAAACAAACAAACAAAAAAA
CAAGCTCAAAGACTTGCTTTTGTCTTCCCTATTAAGCTATTTTAGACACT
GTTGTAGCTTCTGTGAAGTTATGTTCAGAGAATCTGTGGTCCCTATTGAC
TTCTGTATTCTCCTTCCTTATTTTGGTTTTTGTTTTGTAAAGGAGTCTTG
CTATGTATCTTAGCTGGCCTATTCTTCACTATATAAACAGGGCTGGTGTC
CAACTCAGATATCTTCAAGCTTCTGTTTCTTGAATAGCAGTATTGAAAGG
TGCAGCATCTCTGTACATTCTCTTATATATATCCATCTAGAAATACATGT
GCACTAATTCCCTCTATAGACTCTTGTTTGCTGGACAACTTGGAAGTGAG
TTTTAGAATTGCTATCAGTTTGTTATCACTTTGTTTCCTGCTTTCTCTAA
TTATTTTTGAGGAAATCCAGCCATTTCAAATTTATAAGTCTAAATACTTA
TAGTTGCTTCTAATCATGTGTATCTGTTATATTTCTCAAAATGTGGCTAG
TACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_e10.g1 MSMg01no070_e10.g1 CHROMAT_FILE:
MSMg01no070_e10.g1 PHD_FILE: MSMg01no070_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:17 2005
         (581 letters)



>mm_chr3_113500713_113501693
          Length = 981

 Score = 1123 bits (581), Expect = 0.0
 Identities = 581/581 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatttagctggtccttgatcaagaaaacaaaacgaagcaaaacaaaataaacaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatttagctggtccttgatcaagaaaacaaaacgaagcaaaacaaaataaacaaacaa 260

                                                                       
Query: 61  acaaacaaacaaaaaaacaagctcaaagacttgcttttgtcttccctattaagctatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaacaaacaaaaaaacaagctcaaagacttgcttttgtcttccctattaagctatttt 320

                                                                       
Query: 121 agacactgttgtagcttctgtgaagttatgttcagagaatctgtggtccctattgacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacactgttgtagcttctgtgaagttatgttcagagaatctgtggtccctattgacttc 380

                                                                       
Query: 181 tgtattctccttccttattttggtttttgttttgtaaaggagtcttgctatgtatcttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtattctccttccttattttggtttttgttttgtaaaggagtcttgctatgtatcttag 440

                                                                       
Query: 241 ctggcctattcttcactatataaacagggctggtgtccaactcagatatcttcaagcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggcctattcttcactatataaacagggctggtgtccaactcagatatcttcaagcttc 500

                                                                       
Query: 301 tgtttcttgaatagcagtattgaaaggtgcagcatctctgtacattctcttatatatatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttcttgaatagcagtattgaaaggtgcagcatctctgtacattctcttatatatatc 560

                                                                       
Query: 361 catctagaaatacatgtgcactaattccctctatagactcttgtttgctggacaacttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catctagaaatacatgtgcactaattccctctatagactcttgtttgctggacaacttgg 620

                                                                       
Query: 421 aagtgagttttagaattgctatcagtttgttatcactttgtttcctgctttctctaatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgagttttagaattgctatcagtttgttatcactttgtttcctgctttctctaatta 680

                                                                       
Query: 481 tttttgaggaaatccagccatttcaaatttataagtctaaatacttatagttgcttctaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttgaggaaatccagccatttcaaatttataagtctaaatacttatagttgcttctaa 740

                                                    
Query: 541 tcatgtgtatctgttatatttctcaaaatgtggctagtaca 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcatgtgtatctgttatatttctcaaaatgtggctagtaca 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)