Query= MSMg01no070_e19.b1 MSMg01no070_e19.b1 CHROMAT_FILE:
MSMg01no070_e19.b1 PHD_FILE: MSMg01no070_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:19 2005
(629 letters)
>mm_chr3_123068578_123069606
Length = 1029
Score = 580 bits (300), Expect = e-169
Identities = 399/460 (86%), Gaps = 47/460 (10%)
Strand = Plus / Minus
Query: 216 ttgggaaaggatctttaccaatcctaaatgc-gataggggactaatatctaatatataca 274
||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct: 1029 ttgggaaaggatctttaccaatcctaaat-ctgataggggactaatatccaatatataca 971
Query: 275 aagaactcaagaaactggactccagaaagcattcttaccccagtgtcacagcggct---- 330
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 970 aagaactcaagaaactggactccagaaaccattcttaccccagtgtcacagccgctgtag 911
Query: 331 -------------------tt------agatcctgtgccttgtctccatgctgggctgca 365
|| ||||||||||||| ||||||| |||||||||||
Sbjct: 910 aagcagtgcggagttcgtgttggctccagatcctgtgcctagtctccacgctgggctgca 851
Query: 366 gcatggtccctcggcccttgtgtccctcagtcc----------------ttgtgcttctc 409
|||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct: 850 gcatggtccctcggtccttgtgtccctcggtccttgtgtccctcggtctttgtgcttctg 791
Query: 410 cactgaggccacatttgctttcaccccctttctcttaatggcaaactcctttcaaataac 469
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 cactgaggccacacttgctttcaccccctttctcttaatggcaaactcctttcaaataac 731
Query: 470 cagctttccacagatgcctccgtcactcttagttttttggacctttagctcttgtgaaac 529
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 730 cagctttccacagatgcctccgtcactcttagttttttggaccttcagctcttgtgaaac 671
Query: 530 tccaaatcaatctgaacgtcccactagtcggctagcacaagtgcattttcctaggtctgt 589
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tccaagtcaatccgagcgtcccactagtcggctagcacaagtgcattttcctaggtctgt 611
Query: 590 atatgtatctgctggtctaaattttctggcacccaccaac 629
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 610 atatgtatctgctggtctaaattttctggtacccaccaac 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_e19.g1 MSMg01no070_e19.g1 CHROMAT_FILE:
MSMg01no070_e19.g1 PHD_FILE: MSMg01no070_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:19 2005
(519 letters)
>mm_chr3_122890804_122891722
Length = 919
Score = 973 bits (503), Expect = 0.0
Identities = 515/519 (99%)
Strand = Plus / Plus
Query: 1 cctttaaaataaaatgagctccacatatggaacttgacacttccaaattatttagaatct 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttaaaataaaatgagctccgcatatggaacttgacacttccaaattatttagaatct 260
Query: 61 caaaaattaagctctgagcacccagtggggacagtcctatgtgaagggctagagaggtaa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaattaagcactgagcacccagtggggacagtcctatgtgaagggctagagaggtaa 320
Query: 121 caaattcaaaacacatattgcgtacacactgtggctgtggagacttgaagtatctgtgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaattcaaaacacatattgcgtacacactgtggctgtggagacttgaagtatctgtgtc 380
Query: 181 cggcttcttctgtagatgtgctgttaaagttactcctcacaggtgtgagtttcctcttcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 cggcttcttctgtagatgtgctgttaaagttactcctcacaggtgtgagtctcctcttcc 440
Query: 241 tcaaccttctgctcaacaacaggaagctaccaaccgagggcagcagcaccaggccctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaccttctgctcaacaacaggaagctaccaaccgagggcagcagcaccaggccctgtg 500
Query: 301 ttagcatcatttatcccgaggtgagccagaattcacacagagtgcccctgaaggcggaag 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ttagcatcatttatcccgaggtgagccagaattcacacagagtggccctgaaggcggaag 560
Query: 361 acatcttctattttaatattcagaacagatgagagatggcagatgttgagccttggaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatcttctattttaatattcagaacagatgagagatggcagatgttgagccttggaaga 620
Query: 421 gagcggtttctactacctactagaaaatgtggaaggatcgaatttctttggtatggttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagcggtttctactacctactagaaaatgtggaaggatcgaatttctttggtatggttaa 680
Query: 481 gtatataaagcagacagataaatggaagtcaaagctggt 519
|||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtatataaagcagacagataaatggaagtcaaagctggt 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
