BAC Information

Click to search

BAC

Clone NameMSMg01-070G21
Chromosome3 (Build37)
Map Location 59,844,272 - 59,844,626
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac
Downstream geneSucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070G21.T7 (MSMg01no070_g21.b1)MSMg01-070G21.TJ (MSMg01no070_g21.g1)
ACCAG294453AG294454
length661673
length of high quality
(start - end)
498 (35 - 532)580 (76 - 655)
definitionCHROMAT_FILE: MSMg01no070_g21.b1 PHD_FILE: MSMg01no070_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:30 2005CHROMAT_FILE: MSMg01no070_g21.g1 PHD_FILE: MSMg01no070_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTCCAGTT
TTGTGCTTAATGCCAAATTCTTTACAAAATGAAGTAAAATTTTTACTAGA
ATAGGATGGCCCGTTATCTGTCTTAATAAGTTTAGGCAATCCCATGGCAT
TAAAGGCTTGTAGGCAATGGTCAATTACATTTTTAGAACCTCTTCTGTAT
GCAGAGAAGAAAAAAAGGAATCCTGAATATGTATTGATACAAACAGGTAT
ATATTTTAATTTTCCAAATTCCACATAATGAGTTATATCTATTTGCTAAA
TATGATTAGGCATAAGACCTCTAGGATTGACTCCTAAATGTGGCACTGGA
GATAATGTAATACATTTAGGACATTGTTTTACAATCATTCTTGCTGCTCC
TTAATGATCTTATGTCAGAGCCTTAAGGTATGGCTAGAGAGATGAAAGTT
TTCATGATCATGTTTGGCCAAAGCAACAGGATCCGAAATTAAGCCTTCTC
CTATTAGTCGACACAATCATTGCCTTCAGCTAAAGGTCCAGAAAGAACAG
AAAGGGCTTGTATGTGGCCAATATAAAACGGATTTTTTCCAGGCAAGAAT
GATGTTTTTGCAATTTGAAAACAAGGATCCTGATGGCTTATTAAAGTTAA
ATGTACCACAG
NNAACGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACATAGCCCAGCTTTTATTGTGC
AAATCTTGTTCTTTAATTTAAAACTATTTGTTGATTAAAGGTGGCTACAT
CTTTTAACTGGGCAAAAGAGAGGTAGGCAGAGCTTCATTTCCCCTGCTTG
TGGTCTGAGGCAAAGACCACAGGGAAGAGAGAAGAAGGAAGAAGATGCCA
TGGGCTAGGTGGATTAGGTGAGCATAGCCAATGAGGGATGGCCAGTTGGA
GTAGGAGCAGCCCAGGTAGAACATGGCAAGATATATCTCAGGATTATTGA
CAGGGAAGTTAACAAAATAGCATAGAGGGTTGATATCTGCCCAGCTCTAA
TGATTTAAAAATAATATAAATATAAAGATTTTGTGCCTTTTATTTGAAAA
CTACATGATCTAAGTTTGGTAGAAACAATCAATGAATGTTTATTCCAACA
GTATCTAGATTTAGAATGTATCTTATTACTTCATTCCTTTAAGCTTAAAT
TTTCTTATGTGTAACATAATAATGAGTAGTAAAAGTGCACTATAGAATTG
TTATGGAATTTGTGCCTGTTGACAGTTGGTTAAATACCAGTTTCATAAGC
ATGTGGACATGCATTTGGATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_g21.g1 MSMg01no070_g21.g1 CHROMAT_FILE:
MSMg01no070_g21.g1 PHD_FILE: MSMg01no070_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:30 2005
         (580 letters)



>mm_chr3_59843647_59844626
          Length = 980

 Score =  679 bits (351), Expect = 0.0
 Identities = 354/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 226 gtaggagcagcccaggtagaacatggcaagatatatctcaggattattgacagggaagtt 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 gtaggagcagcccaggtagaacatggcaagatatatctcaggattattgacagggaagtt 921

                                                                       
Query: 286 aacaaaatagcatagagggttgatatctgcccagctctaatgatttaaaaataatataaa 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 aacaaaatagcatagagggttgatatctgcccagctctaatgatttaaaaataatataaa 861

                                                                       
Query: 346 tataaagattttgtgccttttatttgaaaactacatgatctaagtttggtagaaacaatc 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tataaagattttgtgccttttatttgaaaactacatgatctaagtttggtagaaacaatc 801

                                                                       
Query: 406 aatgaatgtttattccaacagtatctagatttagaatgtatcttattacttcattccttt 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aatgaatgtttattccaacagtatctagatttagaatgtatcttattacttcattccttt 741

                                                                       
Query: 466 aagcttaaattttcttatgtgtaacataataatgagtagtaaaagtgcactatagaattg 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagcttaaattttcttatgtgtaacataataatgagtagtaaaagtgcactatagaattg 681

                                                                  
Query: 526 ttatggaatttgtgcctgttgacagttggttaaataccagtttcataagcatgtg 580
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 680 ttatggaatttgtgcctgttgacagttggttaagtaccagtttcataagcatgtg 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)