Query= MSMg01no070_m21.b1 MSMg01no070_m21.b1 CHROMAT_FILE:
MSMg01no070_m21.b1 PHD_FILE: MSMg01no070_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:00 2005
(366 letters)
>mm_chr3_96706724_96707489
Length = 766
Score = 634 bits (328), Expect = 0.0
Identities = 353/362 (97%), Gaps = 2/362 (0%)
Strand = Plus / Plus
Query: 6 gaattccataaaaagacactgtggaaatctggaggcacgatggcacagccaggttaagaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccataaaaagacactgtggaaatctggaggcacgatggcacagccaggttaagaa 265
Query: 66 actaaaagaagtttaggaagtctatacagtataaaaaacaaaatgagaacatggtgagtg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 actaaaagaagtttaggaagtctatacagtataaaaaacaaaatgagaacatggtgagtg 325
Query: 126 agacacaaggctaaatagccaaaagtcagggtcctatcgtaagccgctatgtatgacatg 185
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 326 agacacaaggctaaatagccaaaagtcagggtcctatcgtaagccgctatatatgacatg 385
Query: 186 ttaaggactttgtgctttattctgtggcatgaacaaaaatgtcagaggtaataagtttta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttaaggactttgtgctttattctgtggcatgaacaaaaatgtcagaggtaataagtttta 445
Query: 246 taaagnttaacttcttttattatttgtgtg-tgtgcacatgcgcttgcaagtagaaggca 304
||||| |||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 446 taaagtttaatttcttttattatttgtgtgct-tgcacatgcgcttgcaagtagaaggca 504
Query: 305 ggggacaacttttgggagttagntctctccttccattctgagcaccaagatctagctcag 364
|||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 505 ggggtcaatttttgggagttagttctctccttccattctgagcaccaagatctaactcag 564
Query: 365 gt 366
||
Sbjct: 565 gt 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_m21.g1 MSMg01no070_m21.g1 CHROMAT_FILE:
MSMg01no070_m21.g1 PHD_FILE: MSMg01no070_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:00 2005
(305 letters)
>mm_chr3_96837436_96838133
Length = 698
Score = 540 bits (279), Expect = e-158
Identities = 296/305 (97%), Gaps = 7/305 (2%)
Strand = Plus / Minus
Query: 1 caagacagtggcaaggcagaacaacctgacttggtgagtaccaaggaactgtgagcatca 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 498 caagacagtggcaaggcagaacaacctgacttggtgagtaccaaggagctgtgagcatca 439
Query: 61 cttgagtaggaaagacagggctcgctcagaaaacatccctcttggggtttccactctgca 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 cttgagtaggaaagacagg----gctcagaaaacatccctcttggggtttccactctgca 383
Query: 121 ctccggattcctcctcgctggcagctgcggagtgaggaaagggcctggagggccagctat 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctccggat---tcctcgctggcagctgcggagtgaggaaagggcctggagggccagctat 326
Query: 181 gggttacaagctccaaacagctctgctgctccaggggtgagggtggagacctgacgggaa 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggttacaagcgccaaacagctctgctgctccaggggtgagggtggagacctgacgggaa 266
Query: 241 ggtaggaagtccagcagtgtccctctagcagtgaatcaggctctgggctgggctgtgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtaggaagtccagcagtgtccctctagcagtgaatcaggctctgggctgggctgtgcct 206
Query: 301 ctggg 305
|||||
Sbjct: 205 ctggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 698
Length adjustment: 9
Effective length of query: 296
Effective length of database: 689
Effective search space: 203944
Effective search space used: 203944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
