BAC Information

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BAC

Clone NameMSMg01-071H16
Chromosome3 (Build37)
Map Location 60,454,438 - 60,454,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
Downstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071H16.T7 (MSMg01no071_h16.b1)MSMg01-071H16.TJ (MSMg01no071_h16.g1)
ACCAG295253AG295254
length695698
length of high quality
(start - end)
566 (45 - 610)314 (68 - 381)
definitionCHROMAT_FILE: MSMg01no071_h16.b1 PHD_FILE: MSMg01no071_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:54 2005CHROMAT_FILE: MSMg01no071_h16.g1 PHD_FILE: MSMg01no071_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGCCTTTTTCTAAACCATGGTTACCAGCCGTACATGTGGTACTT
ATACATGGATGTAGGCAAAATACCCATGCATAAAAATAATATCAATATGG
GAGAAGAAAAATGGCCCAATGTCTTCATTGTTTAGAACATAGTTAAAACA
TCAGGCCCACTCTGAGAAGCCAAACAACTATAAGGTTCTTGAGCTATGCT
TTAAAACCCTGGCTACGAATTAAACCAGGAAGACTCCACAAATATACTGT
GAGCTCCATTCAAATTTTAAATATGGTTGGTATCACAGACTTTAAACTGC
CATCATCAGTGTTTCAAAAAGAAACAGTTTTGGTCTTCGGAAATTTAGCT
GGGAGACGTGTCAGGCCAGTGGCCTTTCTTCAATTCTTGGTGCACTCTGC
AAGCCACATTTGGGTTGTGCTTGTTTCCTGCAGAGGTCTTCAAGAGCAGA
GTTGACAGCAGTGTCCACATTTTGTGGGCATCACCTCCAAGGTAGGAAGG
CTTTCATTGTCAAATTGTCTTCTAAGAAGCCCGCTGGGCTGGGCTGCATG
AACTGTTGTAGCTTCATGATTGTAGTCCTGGTGAAATACGTGGCAGAAAT
ACAGAGTGTCAAGCTCACAATTTTATTTTGATTTTTTCTTGCCAA
AATGAAGTGTGAGGCTGGGCGGCCGCCTGGTACAAAAACTGAGGTGACCT
ATAGAAGTTCCAGAAAAATTCTTAGATACTTATTTTGATCCATAATGAGC
ATTTATATATGTAACACACACACACACACACACACACACACACACACACA
CACACACACACACACACTGGTGAAGACATAGCTGTGAGACATGTTGCCCG
AAATGACAGAATCCTTCAGAATGTATTCTCTTCATGCTTCGCAATGATAA
TGGGTTTCACATACTCTTATTACCCCTAAGGGAAGGGCCCCACACAGGAG
ACAATTCCATCTATTTTTTTTGCTGACACCTACTGGAAATTCCAACTGTC
CTCAGTTCCTATGGTTAGCTAAAAAGGAAGAAATAAGAATACACAGAAAC
AATATATTAAAAAACACCAATGAAAAACCTTTATAACCCAAACAAAAGAA
TTATAAAATTGAACAATGTATGGCATTTATTCGATTGAATGTACTAGTTT
TAAAACACTGTCTGTAGATATACTAAATCACATATTTATGACTATAAATA
TCCATGAGCAACCCAAAGTATAGATTTAAGAATGGATTTGATATATTTTA
ATTCATGAATTTCTTCTTATTTATTATTATGAATGTGTACAGATGTTAAC
TTTTTAGATCAACCTTAAACAGCTTTCTTTTTGCCCCCTAACATGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_h16.g1 MSMg01no071_h16.g1 CHROMAT_FILE:
MSMg01no071_h16.g1 PHD_FILE: MSMg01no071_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:54 2005
         (314 letters)



>mm_chr3_60454138_60454851
          Length = 714

 Score =  547 bits (283), Expect = e-160
 Identities = 307/321 (95%), Gaps = 12/321 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttagatacttattttgatccataatgagcatttatatatgta--acacacacacac 58
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 616 attcttagatacttattttgatccataatgagcatttatatatgtaacacacacacacac 557

                                                                       
Query: 59  acacacacacacacacacacacacacacacacacacacacactggtgaagacatagctgt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acacacacacacacacacacacacacacacacacacacacactggtgaagacatagctgt 497

                                                                       
Query: 119 gagacatgttgcccgaaatgacagaatccttcagaatgtattctcttcatgcttcgcaat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gagacatgttgcccgaaatgacagaatccttcagaatgtattctcttcatgcttcgcaat 437

                                                                       
Query: 179 gataatgggtttcacatactcttattacccctaagggaagggccccacacaggagacaat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gataatgggtttcacatactcttattacccctaagggaagggccccacacaggagacaat 377

                                                                       
Query: 239 tccatctattttttt-----tgctgacacctactggaaattccaactgtcctcagttcct 293
           ||||||||      |     ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 376 tccatcta-----gtgcaagtgctgacacctactggaaattccaactgtcctcagtttct 322

                                
Query: 294 atggttagctaaaaaggaaga 314
           |||||||||||||||||||||
Sbjct: 321 atggttagctaaaaaggaaga 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)