BAC Information

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BAC

Clone NameMSMg01-071N10
Chromosome3 (Build37)
Map Location 140,208,318 - 140,208,443
singlet/doubletsinglet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071N10.T7 (MSMg01no071_n10.b1)MSMg01-071N10.TJ (MSMg01no071_n10.g1)
ACCAG295526AG295527
length713696
length of high quality
(start - end)
80 (71 - 150)126 (180 - 305)
definitionCHROMAT_FILE: MSMg01no071_n10.b1 PHD_FILE: MSMg01no071_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:22 2005CHROMAT_FILE: MSMg01no071_n10.g1 PHD_FILE: MSMg01no071_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGTAGGATCCTAATAAGCAATTTTCTAGAAGCCACTGATCACAGTG
ATTCAAAATATAGCAAAGCAAGTTCAAAAAGGAAAATTTATAGCCATGAG
GTTAGTATTATAGAATCAAACAGATCTCAATACATTGCTTAATGATTGCA
TAGCAAATCTTTGAAAAACAAGAACCAGACAAACCAAAAATCAATAGTTG
GAAAGACATTTTAGTGTTAGTAAGAAAATACCGGAATGGAAACGAGATGA
CAGTGAAAAGAAAACAATAAGTTCTCTATGATAAGCTTGATGTCATTGAT
GACTTAGCACATCATCTCACATACACACATATACATGCATGCATGCTCAC
ACTCATGATTACACCCATCCACAAATTCACACTTACTATTTACACACTCA
CACACACACATTAATACACACACACACATTCACATCACATTACTCTACCT
CACAGATATCTAAATTACTCACCTTTGATGTAACCACCATTAAGCCTAAT
GCCACAACGTACACCACGACTGTAGATTTACTCCTTACGCCAGCACCCTT
ATTTGTGTGCTACCAACACTCCTTGTCTTTTATTTTCCAACTATACATTC
CCCGAACTTCATTGTTTTTTCACTTTTTCGCCACCCTTATACATATTTTA
TTCATTATCCTTA
ATGATGTGGGAGGCCTGGCGGCGCCTGTTTCAAGAATGGAGGTGACCTAT
AGAATTTCCGCGAAATTCTATTGATGTGGATCACAAGTTTAAGGGGGGAA
GGGGAGGCCAGGGTTAGATTGCAGGAACCTAAGAAAGTGTAAATCCTAAC
TTATTACAAAACAAAATATAGAGAAGGGGTAGCTTCATATTTACTCAATT
ATTTGCCTTCTACTTTCATGGAACAAATGAGAATTAGGATGATATAACAG
ACAAGTTTACCATCAGGGGCAGTTGTTTTTTCTCATAGGTATGTAAGGAT
TATTCTTTATAATTAATCAAATTCTGATTTGCCAAATTCTACCTTTTTAT
ATGCATTTTATCTTATAGTTGGCTAGCATGATTTCGCAGGTTTTCCAGAT
AGAATATTCCCCAAAATTTCTTTCACTTAAAATAATATATACATGATGAT
GACTACAATGATGCCTGTTGCCTGATGTCGACGACGATGATTATAGGAAA
GCGCATGCATATGGTTACCAAAAACTTGAAGTCTTAAGATAGCTGCCATT
TACATTATTCTGAACATAATAAAAATGCCCGGCATTTACCATCTGTACTC
ATACGCCTTTCCATTATTAACTTTGCACGACACGAACCCCACCACCCTTT
GATATATTAACACTGTTTTTTTCCTATTGGTACTACAAAGTGGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_n10.g1 MSMg01no071_n10.g1 CHROMAT_FILE:
MSMg01no071_n10.g1 PHD_FILE: MSMg01no071_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:22 2005
         (126 letters)



>mm_chr3_140208118_140208643
          Length = 526

 Score =  236 bits (122), Expect = 4e-67
 Identities = 125/126 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcttcatatttactcaattatttgccttctactttcatggaacaaatgagaattagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcttcatatttactcaattatttgccttctactttcatggaacaaatgagaattagga 260

                                                                       
Query: 61  tgatataacagacaagtttaccatcaggggcagttgttttttctcataggtatgtaagga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tgatataacagacaagtttaccatcaggggcagttgttttttctcataggtatgcaagga 320

                 
Query: 121 ttattc 126
           ||||||
Sbjct: 321 ttattc 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)