BAC Information

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BAC

Clone NameMSMg01-071O24
Chromosome3 (Build37)
Map Location 110,192,088 - 110,192,381
singlet/doubletsinglet
Overlap genenone
Upstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071O24.T7 (MSMg01no071_o24.b1)MSMg01-071O24.TJ (MSMg01no071_o24.g1)
ACCAG295601AG295602
length706708
length of high quality
(start - end)
406 (44 - 449)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no071_o24.b1 PHD_FILE: MSMg01no071_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:30 2005CHROMAT_FILE: MSMg01no071_o24.g1 PHD_FILE: MSMg01no071_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCGGAAT
TCAGAGATCTGCCTGCCTCTGTTAAGTACAGAGGTTAAACTAGCTGGATA
GGACCCCACCCTGGAATTACTATTCTGACCACACCTAAATCTAAATTCCC
TATGTCCCAGGCTAACCTCAAACTCAGGAATTAGCCTGCATTCCTATCTG
CTTGCCTCTGTATCTTTGTGACAATCTGGCTCACAGTGTAACTGCCTCTG
TTCCCTTAGATCTGTGAAGCTCCTTATATAATTCGTATTACATCCTTATA
GTTTTGCATAGGTGAGAAATTAAATATTTTTGAAACCATGTTTTTAGAGT
TCCTTCCCACAGCCTTAAGGGTTGTCCTGAAGGTCTTAGTGTTTATCACT
TTGCTGAGACGTTAACCACACCTTCACATCCCAGACTCATGCTGTCTCTG
GATTATCATGGAATCATTATCCTTAACCAAGTGGGGGAGGGCAATTTCTC
AAAGGGACATGAAGGAGCCTCATCATTCTGTCCTCACCAAGGCCTTGTTG
TGTTCAGCATCTCTCCCTCTTTTGTATTTAATTCGACGCAACAAATGTTG
ACCTTGATTATTTTCCTAGCTTGATGAATAACTACGTATAAAAGAGCTGA
TTTGTGTGAAAAATCTCTAAAATTAACACAGTTCTTCCAATATTTTTATT
TCTATN
NTCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTACTCACAAGTGACTGAAGGATC
TAGAGTTCAAGGCAGACTTCCTTTAGCTACCTGATGAGTTTGAGATCAAC
CTGAAATGCATTAAACTCTTTCTAAATAAAAACAGAGAATGGGAAAAGCA
TGTATCACCTATTTTAAGTATCTGAGAATGCTTTAGATTCACTGTTATAT
GAGTCAATATTCTCTCAACTGCAAACAGTAGAAATGGATTCCATTTATTT
CAACAAGAAGGCAATACATTCAGATGATATTAAGATAGATAACCCACAGG
TTTTAAGGGAGAGGTCAGTAAAACCAGTGGTCCTGTAACAGGCAAAGAGA
GAAATTGACATATGGAATATCAGTAACAAATTATAACAACATCCCTACAT
ACTGTAAACCAAGAGCTTAGCTTTGTGTTCCCACATTCAAAACCTAAAAT
TATAGTGTCTATTGACCTCATCCAGAATGCGTACATTAAAAATAAAGATT
ACTGTTTCACAGAATCATTACATCTAATATTAACAGGTAAAAGGGTAAGG
TATTTGCCATACACCAAACCCACCAGGATTTTATAGCGAGCATCTGATGG
CAATTATTAAAAATTCATTACAAAAACAAAACTCCCACTAGCATTAAAAA
ACCCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_o24.g1 MSMg01no071_o24.g1 CHROMAT_FILE:
MSMg01no071_o24.g1 PHD_FILE: MSMg01no071_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:30 2005
         (294 letters)



>mm_chr3_110191781_110192474
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actactcacaagtgactgaaggatctagagttcaaggcagacttcctttagctacctgat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 601 actactcacaagtgactgaaggatctagagttcaaggcaaacttcctttagctacctgat 542

                                                                       
Query: 61  gagtttgagatcaacctgaaatgcattaaactctttctaaataaaaacagagaatgggaa 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 541 gagtttgagatcaacctgaaatgcattaaactctgtctaaataaaaacagagaatgggaa 482

                                                                       
Query: 121 aagcatgtatcacctattttaagtatctgagaatgctttagattcactgttatatgagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagcatgtatcacctattttaagtatctgagaatgctttagattcactgttatatgagtc 422

                                                                       
Query: 181 aatattctctcaactgcaaacagtagaaatggattccatttatttcaacaagaaggcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatattctctcaactgcaaacagtagaaatggattccatttatttcaacaagaaggcaat 362

                                                                 
Query: 241 acattcagatgatattaagatagataacccacaggttttaagggagaggtcagt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acattcagatgatattaagatagataacccacaggttttaagggagaggtcagt 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)