XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAATCCGCGGAATTCCA
GATCTTCTGCTCTCCTATGAGCATCTGCATGGAAAAGGTCAAACCAAACC
ATTCTTTCTTCAGCGCTGTCTTCTTTTGTATGTAGGGACACAGAGAATTC
AATCATTTTCCTTTCCTTTTCCTTTCCTTTGGCAGGACCGTTACAGGAGT
TTGCCTTGAATCCCCCATTCCATCCCCACATTCCTATTGTCACATCTGTC
CTGACTGCACCACAATGCCCAGTGATAGTATGCATTCCAGGAGTACAAAC
TGAATGAGATAACAATGGACAGATACCACATGTCTATCTGCTCTAGCTAC
TGAGATGAGTATGGAAGGAGTCACTGGCCTCAGTCAGCTAACTGTGCACT
ATGGAATATAGAAGAAGCCACAAAACAGATTAATAAACCATCGGAGTTAT
TCACTGGTTTTCATGGAAGGGAGAGGTGCTACAACCCCCCTAGGAGAGAC
CATCTGATTTCGCTGGGTTTGATGGAGACTTAAAGGACATACAAAAGAGA
GCCAAACAAACAAACAAACAAATAAACAGTCTACCAGGTAGACACAAAAT
GAAAGAGAGTGGNTTTTGTGTCATGGGCCAAAGTTTAACTGATAAATGTC
CAGACACACATTAGAAAGGTAGNCAGTGGTTAGGCTGTGAAAGAACTTAT
GA

TAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCTTAACATCTAAATCCCTTTGATCCCC
TTGAGTTGTCTCACTGCTCTAAGATTTCAAGTACTATATTGACTAGGTAT
GGAAAGATGAACAACCTTGTCTTGTTCCTGGTTTTACTAAAATTGCTTTG
AGTTTCTATTCATTTAAGTTGATGTTGGCTATGAGCTTGCTGTAAACTGC
CTTTATTGTGTTGAGTCATGTCCCTTGTAAACCTAATATTCCAGGACTTT
TGTCTTGCAGGGGTGCTTGATTTTACAAAGGCATTTTATACATCTAATGA
GATGATTGCATGGTTTATGTTTTCAGTTTGTTTATTTATACATATCTACT
AAAAGGAATCCTAATAGAATTCAGATATACTCATAGATCAGGGACTTGCT
CAGCCATCATCAGAGAAGCTTCCTGTACAGAAGGTGAGAACAAATACAAA
CACTCACTGCCCAACAATATGCAGCAAGTGAGAGACCTTGGAACACTTAG
CCTTAAACTGGATGCCTCCATCAAATCTCCTTAGGGCTCTGACAACCCTG
CAGAAGTGGAAACATAAAGAGTGTAAGAGCCAAAAGGATGAAGGATAAAA
AGAAAACAAGGCATCTAAATCTTCAAGACAGACACATATATGAACTCCCA
GCTA

Query= MSMg01no072_a21.b1 MSMg01no072_a21.b1 CHROMAT_FILE:
MSMg01no072_a21.b1 PHD_FILE: MSMg01no072_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:40 2005
         (552 letters)



>mm_chr3_148123019_148123970
          Length = 952

 Score = 1019 bits (527), Expect = 0.0
 Identities = 542/547 (99%), Gaps = 2/547 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   tccagatcttctgctctcctatgagcatctgcatggaaaagg-tcaaaccaaaccattct 65
           |||| |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 712 tccaaatcttctgct-tcctgtgagcatctgcatggaaaaggttcaaaccaaaccattct 654

                                                                       
Query: 66  ttcttcagcgctgtcttcttttgtatgtagggacacagagaattcaatcattttcctttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttcttcagcgctgtcttcttttgtatgtagggacacagagaattcaatcattttcctttc 594

                                                                       
Query: 126 cttttcctttcctttggcaggaccgttacaggagtttgccttgaatcccccattccatcc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cttttcctttcctttggcaggaccgttacaggagtttgccttgaatcccccattccatcc 534

                                                                       
Query: 186 ccacattcctattgtcacatctgtcctgactgcaccacaatgcccagtgatagtatgcat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ccacattcctattgtcacatctgtcctgactgcaccacaatgcccagtgatagtatgcat 474

                                                                       
Query: 246 tccaggagtacaaactgaatgagataacaatggacagataccacatgtctatctgctcta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tccaggagtacaaactgaatgagataacaatggacagataccacatgtctatctgctcta 414

                                                                       
Query: 306 gctactgagatgagtatggaaggagtcactggcctcagtcagctaactgtgcactatgga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gctactgagatgagtatggaaggagtcactggcctcagtcagctaactgtgcactatgga 354

                                                                       
Query: 366 atatagaagaagccacaaaacagattaataaaccatcggagttattcactggttttcatg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atatagaagaagccacaaaacagattaataaaccatcggagttattcactggttttcatg 294

                                                                       
Query: 426 gaagggagaggtgctacaacccccctaggagagaccatctgatttcgctgggtttgatgg 485
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 293 gaagggagaggtgctacaacccccctaggagagaccatctgattttgctgggtttgatgg 234

                                                                       
Query: 486 agacttaaaggacatacaaaagagagccaaacaaacaaacaaacaaataaacagtctacc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agacttaaaggacatacaaaagagagccaaacaaacaaacaaacaaataaacagtctacc 174

                  
Query: 546 aggtaga 552
           |||||||
Sbjct: 173 aggtaga 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)