BAC Information

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BAC

Clone NameMSMg01-072E14
Chromosome3 (Build37)
Map Location 152,825,761 - 152,882,236
singlet/doubletdoublet
Overlap geneLOC100040750, St6galnac3
Upstream geneGipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
Downstream geneEG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072E14.T7 (MSMg01no072_e14.b1)MSMg01-072E14.TJ (MSMg01no072_e14.g1)
ACCAG295866AG295867
length692693
length of high quality
(start - end)		638 (45 - 682)618 (74 - 691)
definitionCHROMAT_FILE: MSMg01no072_e14.b1 PHD_FILE: MSMg01no072_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:58 2005CHROMAT_FILE: MSMg01no072_e14.g1 PHD_FILE: MSMg01no072_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,881,603 - 152,882,236)(152,825,761 - 152,826,378)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGGATGATGCTGTAGAGTCAGTTCTCTCTTCTAGCTTGATAGAG
GTTCTGGGGAATCAAACTCAGTTCATTAGGCTTGTATGGCAAGCACCCTT
CCCCTCTGGCCTATCTGACTGATGGATTCTGAAGTCACATTGTGTCATCC
CTCATCCCAGAATCCCCCCTACTTGGAAAAAACAACTAAGGGTGAAGATC
CGTATCTCCAGGCCCTGAGGGTGTCTCAGAGGGTGCCTATCCTTAAAGTA
GCAGTAACATCTGTTTTTATTTCTACCCGGACAAAAAGCCTTTAGCAAAT
TAAGTGTTTATGTATGAACCATGTCTCTGATAAACAGCCCTGGTCGAGAG
CCTGCAGGTATGTACCAAGGGAACCTGGCTGGAGAAGCGTGGAGATCAGA
TGAAGCTGCTCCTGATTTGTAACATAGTTTATAACACAGTTGAACACTCA
AGGTGCATCCATCATCCCCCAGTTTTAATTATATTTATTCTTAGTCGTAT
GTTGTTTACATTTGTTCTCAATTCTGAATTAATGAGGAATTTAATGAGGA
AGAAAAAACATAATTCTGCCAATTTTCTTCTGGATATTTTCTCAAGATCC
ATAAATTTCATTCCTCTGGGGGGAAAAATAGCTATTACAAAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACATCCAGATCGGCAGGCAGGAGGAA
AAGAGAGAGACATGCTTCCTCCAAGGCCACAGCACCCTTTGAGCCTATGG
AGGCAAGTAATAAACAACACGTTTCAACAAGAATTTGAACAATCACTCTC
TGAGGAAATAACTCCCCCTGGTTCGGCATTTGGGCACCTAGGCCCAGCAG
GGCCATAGATGAAAGGGTAAGAGGAACACAAATCAAATATATACGACGAC
TTTACCATGTGATGTGTACAAATTGAAAACAGGCCATGGGGCAGTGCCCT
GTGCTACGAGTGCCGAGCCTCCCAGGGTGTGTTTACAGGCTGTAGGAGGG
TAATTCCTGGTTATTCACCAGGCCACTCTCTTCTCATTCTCAAGCATGGT
CCTGTCTGAATCTTCTAGAATGCCTATTCCTGCAGCTTCGGCATTCTAGA
GAGTCAACATGTCCACAGGGTGACAGTAAATTCCACTGCTGAGAAGTCAG
TTTTGACCATGGTGAACCCCTCTTTTATGCCCATTTTGAAATGAGGCTGC
TGGCCACCCGGTGACACTGGGTAAAATGCAGTTGAGTTCTGATAGCTGGA
TCAGAAACGAGAAGCTCAAATGGTTTATGGCATCCACACTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_e14.b1 MSMg01no072_e14.b1 CHROMAT_FILE:
MSMg01no072_e14.b1 PHD_FILE: MSMg01no072_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:58 2005
         (638 letters)



>mm_chr3_152881281_152882318
          Length = 1038

 Score = 1164 bits (602), Expect = 0.0
 Identities = 626/634 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgggatgatgctgtagagtcagttctctcttctagcttgatagaggttctggg 64
           ||||||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||
Sbjct: 956 gaattcatgggatgatgttgtagagttagttctcttttctagcctgatagaggttctggg 897

                                                                       
Query: 65  gaatcaaactcagttcattaggcttgtatggcaagcacccttcccctctggcctatctga 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gaatcaaactcagctcattaggcttgtatggcaagcacccttcccctctggcctatctga 837

                                                                       
Query: 125 ctgatggattctgaagtcacattgtgtcatccctcatcccagaatcccccctacttggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctgatggattctgaagtcacattgtgtcatccctcatcccagaatcccccctacttggaa 777

                                                                       
Query: 185 aaaacaactaagggtgaagatccgtatctccaggccctgagggtgtctcagagggtgcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 aaaacaactaagggtgaagatccgtatctccaggccctgagggtgtctcagagggtgcct 717

                                                                       
Query: 245 atccttaaagtagcagtaacatctgtttttatttctacccggacaaaaagcctttagcaa 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 716 atccttaaagtagcagtaacatctgtatttatttctacccggacaaaaagcctttagcaa 657

                                                                       
Query: 305 attaagtgtttatgtatgaaccatgtctctgataaacagccctggtcgagagcctgcagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 attaagtgtttatgtatgaaccatgtctctgataaacagccctggtcgagagcctgcagg 597

                                                                       
Query: 365 tatgtaccaagggaacctggctggagaagcgtggagatcagatgaagctgctcctgattt 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tatgtaccaagggagcctggctggagaagcgtggagatcagatgaagctgctcctgattt 537

                                                                       
Query: 425 gtaacatagtttataacacagttgaacactcaaggtgcatccatcatcccccagttttaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gtaacatagtttataacacagttgaacactcaaggtgcatccatcatcccccagttttaa 477

                                                                       
Query: 485 ttatatttattcttagtcgtatgttgtttacatttgttctcaattctgaattaatgagga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttatatttattcttagtcgtatgttgtttacatttgttctcaattctgaattaatgagga 417

                                                                       
Query: 545 atttaatgaggaagaaaaaacataattctgccaattttcttctggatattttctcaagat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atttaatgaggaagaaaaaacataattctgccaattttcttctggatattttctcaagat 357

                                             
Query: 605 ccataaatttcattcctctggggggaaaaatagc 638
           |||||||||||||||||||||||| |||||||||
Sbjct: 356 ccataaatttcattcctctgggggaaaaaatagc 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no072_e14.g1 MSMg01no072_e14.g1 CHROMAT_FILE:
MSMg01no072_e14.g1 PHD_FILE: MSMg01no072_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:58 2005
         (618 letters)



>mm_chr3_152825561_152826578
          Length = 1018

 Score = 1133 bits (586), Expect = 0.0
 Identities = 610/618 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatccagatcggcaggcaggaggaaaagagagagacatgcttcctccaaggccacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacatccagatcggcaggcaggaggaaaagagagagacatgcttcctccaaggccacagc 260

                                                                       
Query: 61  accctttgagcctatggaggcaagtaataaacaacacgtttcaacaagaatttgaacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctttgagcctatggaggcaagtaataaacaacacgtttcaacaagaatttgaacaat 320

                                                                       
Query: 121 cactctctgaggaaataactccccctggttcggcatttgggcacctaggcccagcagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactctctgaggaaataactccccctggttcggcatttgggcacctaggcccagcagggc 380

                                                                       
Query: 181 catagatgaaagggtaagaggaacacaaatcaaatatatacgacgactttaccatgtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catagatgaaagggtaagaggaacacaaatcaaatatatacgacgactttaccatgtgat 440

                                                                       
Query: 241 gtgtacaaattgaaaacaggccatggggcagtgccctgtgctacgagtgccgagcctccc 300
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gtgtacaaaatgaaaacaggccatggggcagtgccctgtgctacgagtgcggagcctccc 500

                                                                       
Query: 301 agggtgtgtttacaggctgtaggagggtaattcctggttattcaccaggccactctcttc 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 agggtgtgtttacaggctgtaggagggtaactcctggttattcaccaggccactctcttc 560

                                                                       
Query: 361 tcattctcaagcatggtcctgtctgaatcttctagaatgcctattcctgcagcttcggca 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattctcaagcatagtcctgtctgaatcttctagaatgcctattcctgcagcttcggca 620

                                                                       
Query: 421 ttctagagagtcaacatgtccacagggtgacagtaaattccactgctgagaagtcagttt 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 ttctagagagtcaacatgtccacagggtgacagtaaattccactgccgagaagtcagttt 680

                                                                       
Query: 481 tgaccatggtgaacccctcttttatgcccattttgaaatgaggctgctggccacccggtg 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaccatggtgagcccctcttttatgcccattttgaaatgaggctgctggccacccggtg 740

                                                                       
Query: 541 acactgggtaaaatgcagttgagttctgatagctggatcagaaacgagaagctcaaatgg 600
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 741 acactgggtaaaatgcagttgagtactgaaagctggatcagaaacgagaagctcaaatgg 800

                             
Query: 601 tttatggcatccacactt 618
           ||||||||||||||||||
Sbjct: 801 tttatggcatccacactt 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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