BAC Information

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BAC

Clone NameMSMg01-073G20
Chromosome3 (Build37)
Map Location 133,443,476 - 133,443,891
singlet/doubletsinglet
Overlap genenone
Upstream geneA630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
Downstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073G20.T7 (MSMg01no073_g20.b1)MSMg01-073G20.TJ (MSMg01no073_g20.g1)
ACCAG296730AG296731
length713715
length of high quality
(start - end)
545 (40 - 584)424 (74 - 497)
definitionCHROMAT_FILE: MSMg01no073_g20.b1 PHD_FILE: MSMg01no073_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:29 2005CHROMAT_FILE: MSMg01no073_g20.g1 PHD_FILE: MSMg01no073_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCGCTAAACGACTCCTATTTCGAGAGATCCGCGGAATTC
TCTTTTGATACTCTCAGAAGAGAACACAAATGGCTGAGAAGCACTTCTCG
AAATGTTCACCATCCTTAGTCATCATGGAAATACAAATCGAAACTACTTG
GAGGTTTCATCTTATACCAGTCAGAATGGGCAAGATCAGTAAAACAGCTC
ATTCTGGTGAGGATGAACATTCTGGTAAGTGGGACAGTCATACACTGCTG
GTGGAAGTGCAAACTTATACAACCACTGTGGAAATTAGCATGATAGCTCC
TTAGAAAGATAGAAACCAAGCTACCTCAAGATCCAGTCATACCACTTTTG
AGCATGGCATATACCCAAAGAATACTTCATCCTACTACAGAGACATCTGT
TCAACCATGCTTATTGCCCCTCCAATTATGATAGCCAGAAATTGGAAAGG
ACCTAAATGGCTATCAATAGGTAAACAGATAAAGAAAATGTGGTACACTT
ACACACTGCAAAAAATAAAATATGAAGTTCTTTGTTAAATGGAGCTAACA
AAAAATCACCCCAAGTGATGTAACCCAGATTCAGAATGACAAACATAGTG
TGTTTTTACTTATGTGTGATGTTAGCTGTTACTTTTTCAGCAAGCAAGCT
TACATCAGTATAACCACAAAAGTTAAGCTATAAGTAAGGGAATGGTGTGG
CGTAGGAATAGAT
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACTTGCGCATAAGGCTTGT
TTACTAGTTAGGCGCAGTGGAAGCCAGCGCCATCTTATAATGGCGATTGC
TCACAGCACGGCTCTCCACACTGTGTGAACACGGTGGAGGGGGCCTAGGG
CCCCAGAGGACTCTCCATGCTGCAGGACCCCTAGCACACCCAGGACCTTG
TGATCACTGGAGACCACGTGGGCGACAGAAGCAACAGAGCTTCTTGGACA
GGGTCCCTTCTGGTCTTCATCCCCAGCCAGGAGGCAGAGCTGAGACTCAG
ACCCCTGGGCACCTTCCTTGCCAGAGGAGAGACAGCCTACAGAGAGGGCT
CTGATCCCAGGACTCAGGTGGATCAGAGCTCCAGACTTCTGGACACCTGC
CTTGCAAGAGGAGAGCTTGCCTGCAGAGAGTGCTCTGACCACTGGGACTC
AGGTGAGAGTTGGACTCTCAGGAGTGCTGACAGAGGCTAACAGAATCACA
GGAGGAACAAGCTCCAGCCAGAGACAGCTAGAACATTAACATCAGAGATT
ACCAGATGGCATAGGCAAATGTAAGAATCTTACTAACAGAAACCAAGACC
ACTGGGCATTGCCAGAAACCAGTATGCCCACCCCAGTGAGTCCTGGATAT
CCCAACACACCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_g20.g1 MSMg01no073_g20.g1 CHROMAT_FILE:
MSMg01no073_g20.g1 PHD_FILE: MSMg01no073_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:29 2005
         (424 letters)



>mm_chr3_133443276_133444099
          Length = 824

 Score =  770 bits (398), Expect = 0.0
 Identities = 414/424 (97%), Gaps = 8/424 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcttgcacttgcgcataaggcttgtttactagttaggcgcagtggaagccagcgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcttgcacttgcgcataaggcttgtttactagttaggcgcagtggaagccagcgccat 260

                                                                       
Query: 61  cttataatggcgattgctcacagcacggctctccacactgtgtgaacacggtggaggggg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cttataatggcgattgctcacagcacggctctctacactgtgtgaacacggtggaggggg 320

                                                                       
Query: 121 cctagggccccagaggactctccatgctgcaggacccctagcacacccaggaccttgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagggccccagaggactctccatgctgcaggacccctagcacacccaggaccttgtga 380

                                                                       
Query: 181 tcactggagaccacgtgggcgacagaagcaacagagcttcttggacagggtcccttctgg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcactggagagcacgtgggcgacagaagcaacagagcttcttggacagggtcccttctgg 440

                                                                       
Query: 241 tcttcatccccagccaggaggcagagctgagactcagacccctgggcaccttccttgcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttcatccccagccaggaggcagagctgagactcagacccctgggcaccttccttgcca 500

                                                                       
Query: 301 gaggagagacagcctacagagagggctctgatcccaggactcaggtggatcagagctcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggagagacagcctacagagagggctctgatcccaggactcaggtggatcagagctcca 560

                                                                       
Query: 361 gacttctggacacctgccttgcaagaggagagcttgcctgcagagagtgctctgaccact 420
           |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gac--------acctgccttgcaagaggagagcttgcctgcagagagtgctctgaccact 612

               
Query: 421 ggga 424
           ||||
Sbjct: 613 ggga 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)