Query= MSMg01no073_l04.b1 MSMg01no073_l04.b1 CHROMAT_FILE:
MSMg01no073_l04.b1 PHD_FILE: MSMg01no073_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:51 2005
(434 letters)
>mm_chr3_38479320_38480152
Length = 833
Score = 812 bits (420), Expect = 0.0
Identities = 429/434 (98%), Gaps = 5/434 (1%)
Strand = Plus / Plus
Query: 5 gaattcctcgttcccttaaaatcccatgtttgctgacatgaggctgctttcttctctgcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcgttcccttaaaatcccatgtttgctgacatgaggctgctttcttctctgcc 264
Query: 65 acaattctaaagacgtttttctatttctttctttttaggtggtgacatacagttgtttag 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaattctaaaga-gtttttctatttctttctttttaggtggtgacatacagttgtttag 323
Query: 125 agattcataatatctcattatcctcttaatatctgtagactatgtggtgatgttgccctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agattcataatatctcattatcctcttaatatctgtagactatgtggtgatgttgccctt 383
Query: 185 cttatcattaataagctttgtttatttttaattttattgtttaacctgaataaaagctag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttatcattaataagctttgtttatttttaattttattgtttaacctgaataaaagctag 443
Query: 245 taaattctatcaattgcttcaaaggataagctttggtttcattgattttctacttagttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaattctatcaattgcttcaaaggataagctttggtttcattgattttctacttagttt 503
Query: 305 tctctgtcaagatattgttttttttttaatccattacattttaattatttcttggttttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctctgtcaagatattgttttttttttaatccattacattttaattatttcttggttttt 563
Query: 365 aaaaaaatctattacattttaattatttcttgtgttcgtatatatatatat----gtgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 aaaaaaatctattacattttaattatttcttgtgttcgtatatatatatatatatgtgtg 623
Query: 421 tgtgtgtgtgtgtg 434
||||||||||||||
Sbjct: 624 tgtgtgtgtgtgtg 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 833
Length adjustment: 9
Effective length of query: 425
Effective length of database: 824
Effective search space: 350200
Effective search space used: 350200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_l04.g1 MSMg01no073_l04.g1 CHROMAT_FILE:
MSMg01no073_l04.g1 PHD_FILE: MSMg01no073_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:51 2005
(262 letters)
>mm_chr3_38632174_38632835
Length = 662
Score = 499 bits (258), Expect = e-146
Identities = 261/262 (99%)
Strand = Plus / Minus
Query: 1 cctggcaggaaagacctaagataatttgagagcttatgtttcccattacagagaatgaag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 338 cctggcaggaaagacctaagataatttgagagcttatgtttcccattagagagaatgaag 279
Query: 61 gagcctttccaagtggtagaatgggtgatgcctcgtcaagatcccaatgagttacttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gagcctttccaagtggtagaatgggtgatgcctcgtcaagatcccaatgagttacttatg 219
Query: 121 ttaaaagcaactctacttggggtgggtgcatggctcagtgagtaaaatacttgccaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ttaaaagcaactctacttggggtgggtgcatggctcagtgagtaaaatacttgccaggca 159
Query: 181 atcaggagaacctgagttcgatactgcaagccaggcacaaagccatacatggtgatgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 atcaggagaacctgagttcgatactgcaagccaggcacaaagccatacatggtgatgtat 99
Query: 241 tattataatcccagcattgggg 262
||||||||||||||||||||||
Sbjct: 98 tattataatcccagcattgggg 77
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space: 165209
Effective search space used: 165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
