Query= MSMg01no073_p11.b1 MSMg01no073_p11.b1 CHROMAT_FILE:
MSMg01no073_p11.b1 PHD_FILE: MSMg01no073_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:11 2005
(648 letters)
>mm_chr3_82262038_82263085
Length = 1048
Score = 1162 bits (601), Expect = 0.0
Identities = 634/645 (98%), Gaps = 2/645 (0%)
Strand = Plus / Plus
Query: 5 gaattccatatgaattctcactagtcacaaaggcacatattttatttctaaaggcaactg 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatgaattctcactagtcacaaaagcacatattttatttctaaaggcaactg 264
Query: 65 gcaacctactcatgctgcacaaagttagggacatatctctcctgttcacctctgagccct 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaacctaatcatgctgcacaaagttagggacatatctctcctgttcacctctgagccct 324
Query: 125 ccagctctgcttcaacagtggacgagatgtttgaaattagccttagtagtcatgaatctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagctctgcttcaacagtggacgagatgtttgaaattagccttagtagtcatgaatctg 384
Query: 185 gatgtcattcctgtcgtcctcttccttagcaaaagctatatcaataacaatattagtaaa 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatgtcattcctgtcatcctcttccttagcaaaagctatatcaataacaatattagtaaa 444
Query: 245 aaaaattataagctaagtgtggtagtgaacgtctgtattccaagagttaggaagatggag 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaattataagctaa-tgtggtagtgaacgtctgtattccaagagttaggaagatggag 503
Query: 305 gcaggaggactgtatatttaaagtcagcctacctactacatagcaagttctaagccactc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcaggaggactgtatatttaaagtcagcctacctactacatagcaagttctaagccactc 563
Query: 365 cacacagcaaaaccctaccctattctattaaacaaaa-cagaaaggaaaactactattaa 423
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 564 cacacagcaaaaccctaccctattctattaaaaaaaaacagaaaggaaaactactattaa 623
Query: 424 attatcaaaatctgtcatcattaaatgatataaccaacactgttcagtgtttgcttctct 483
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 624 attatcaaaatctgtcatcattaaatgatataaccaacactgctcagtgcttgcttctct 683
Query: 484 ctgtgaagtacagcttagaaagtgtgcacattaagactgaaatcctcacctatagacagc 543
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 684 ctgtgaagtacagcttagaaagtgtgtacattaagactgaaatcctcacctatagatagc 743
Query: 544 atgtttggcccaagctctgcccacaggaagagaaaataaaaacattaagtgttcaatgtc 603
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atggttggcccaagctctgcccacaggaagagaaaataaaaacattaagtgttcaatgtc 803
Query: 604 ttcctcccacttcctctcttccatgacatctccttgtcctaagat 648
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttcctcccacttcctctcttccatgacatctccttgtcctaagat 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_p11.g1 MSMg01no073_p11.g1 CHROMAT_FILE:
MSMg01no073_p11.g1 PHD_FILE: MSMg01no073_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:12 2005
(597 letters)
>mm_chr3_82319335_82320330
Length = 996
Score = 1093 bits (565), Expect = 0.0
Identities = 589/597 (98%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 1 tcagagccaacaaaagactgttgagtatgcaaatttttttcctagtttctgtcaaaataa 60
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 796 tcagagccaac-aaagactgttgagtatgcaaatttttttcctagtttctatcaaaataa 738
Query: 61 ttgttatatttaaaaaaatgtagatccttataatactttagacatgtttgccttatgtaa 120
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttgttatattttaaaaaatctagatccttataatactttagacatgtttgccttatgtaa 678
Query: 121 ctggcctactaactgctttagaaattatcttggagaaaaattagagctgcctcaattata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctggcctactaactgctttagaaattatcttggagaaaaattagagctgcctcaattata 618
Query: 181 tcagtatttgttagtctttaagattttatgcttttcaaatatcatttggcaattccaaga 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 617 tcagtatttgttagtctttaagattttttgcttttcaaatatcatttggcaattccaaga 558
Query: 241 tttggaaagaaaaacaaagtttattttattggtcacttctttcttccagtagcaaagagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttggaaagaaaaacaaagtttattttattggtcacttctttcttccagtagcaaagagg 498
Query: 301 ttttgtacagtgatttggcaattagtttttcttggtcgtgaagctgttttccctgtgggg 360
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 497 ttttgtacagtgatttggcaattggtttttcttggtggtgaagctgttttccctgtgggg 438
Query: 361 tggtgtgattgcctggttgttttcctgtctcctgattctctttcacagtggctgctattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tggtgtgattgcctggttgttttcctgtctcctgattctctttcacagtggctgctattt 378
Query: 421 actttctcattgttatttggtgaattaacctgtcatctttttgtgtaaaatatttctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 actttctcattgttatttggtgaattaacctgtcatctttttgtgtaaaatatttctttt 318
Query: 481 ctgaaaaataaggaagagattaagaaagcaattatattgtctcatattgacatcaaatgt 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 317 ctgaaaaataaggaagagattaagaaagcaattatattgtcgcatattgacatcaaatgt 258
Query: 541 ttaaaagcacttttgttttcaatatgttaaattattctcatttctcaaattttatta 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttaaaagcacttttgttttcaatatgttaaattattctcatttctcaaattttatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space: 578782
Effective search space used: 578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
