BAC Information

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BAC

Clone NameMSMg01-074E16
Chromosome3 (Build37)
Map Location 29,725,116 - 29,725,361
singlet/doubletsinglet
Overlap geneLOC100040676
Upstream geneGm1527, 6130401L20Rik
Downstream geneEvi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074E16.T7 (MSMg01no074_e16.b1)MSMg01-074E16.TJ (MSMg01no074_e16.g1)
ACCAG297382AG297383
length708710
length of high quality
(start - end)
233 (46 - 278)247 (78 - 324)
definitionCHROMAT_FILE: MSMg01no074_e16.b1 PHD_FILE: MSMg01no074_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:37 2005CHROMAT_FILE: MSMg01no074_e16.g1 PHD_FILE: MSMg01no074_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAATTGTCCTATATTGAAAGCCATAATATGTATGCAGAGAACT
CGGTAGAGACCTGTGCAGGCTCGCGTGCATGCTGCTCTAGTCTCTGTGAG
TTTATATAAGATTTGATCATGTTGATTTAAAGGGTGTTTTGTTTTGTTTT
GTTTCTAATTGTCATCCATATCCCTCTAGCGCTTACACTCTTTCTCTCTT
TTCTTCTACAAGGTTTCCTGAGCTCTGACGACAGGTATTAGATGCAGCCA
TCACATCCTATCCTGAATGTCCTCTCTGTACTGCGCCTTTGCGCCTCTAT
CTTTGTTTCTTTTCTCCCTCCCCCCCCCCTCCCTTTTTGCTTTCCCTGAC
CCTGCTCCTTCCCCCCCCCCCTATTATAATTTCATTCCCATATTTTCTTT
CTTTATTCATCTTTTCTCCTTACCCCCCTCCCCTCCTCCCTCCCACTATT
TCATCCTTTTTTTCCCCCTACCCCCTCCTTCCTTTCTTCCCCTTTTTTCT
CCCCCCCTTTTTTTTCTTCCGATTTTTTATTATTCCCCTCTCTCCCCTCC
ACTTTTCCCCTCCCCCCCCCCCTATCTTTTTTCCCCCCTTCCCCCCCCAC
TCCCCCCCTCCTTTTTCTCCTCTTTTTCTCCCCCCCCCCCCCCCCTGTCT
TTCTCTTC
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGAACCTAAGCTGCAGATCTG
AAAACTTAACTCATTCAAAGGAAACCAAAAGGTCTCCATTTCCTCAGAGC
AGCCAGAATGGTTCTTTAGTTTGTTTGTTTGCTGAGGATCGCATGACCCT
CCAAGGAGAACGTGTAAGACTCAGGAGACTCGTTGATTTTTCAGTGTTGA
AAACAAATGACATGATAACTGGACAGGCTTGGATCCAGAGGGTGCAACTA
CAAACAAAATCAAGAGGTACTTCTTCAGTACTGCTGAAGTTTGAAAAATC
CATTACCATGTTTTGTTTACCCCCCCCCTCGAGGAAATATCATCTAAGGA
CGACCGTTTCCTATCACTGCCACTCCATCTATTATATGCTTGAGTGGTTC
CAGTACTATCACAATACCATATCCTGTTTCTTTGTCTTGCCCCTCACTGT
TTTTCCAGTCTGTCTTTCTGTCTTCTCCTTCCTTCAACCCTATCATTTTC
TGTTCTCGCTTCCTCAGCCCCCAATTTTTTAAACTTTCGATTTTATCTTT
TTCTTTCCCTGCGTTCTCGCCTTCTCATTCCTCTCTTTCTTATTTCCCTG
TCCCCCTCCCCTCTCCTTTTTTTTTCTTCTATGTCCTTCTTTTACTTTCT
TTTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_e16.g1 MSMg01no074_e16.g1 CHROMAT_FILE:
MSMg01no074_e16.g1 PHD_FILE: MSMg01no074_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:37 2005
         (247 letters)



>mm_chr3_29724916_29725562
          Length = 647

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaacctaagctgcagatctgaaaacttaactcattcaaaggaaaccaaaaggtctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attgaacctaagctgcagatctgaaaacttaactcattcaaaggaaaccaaaaggtctcc 387

                                                                       
Query: 61  atttcctcagagcagccagaatggttctttagtttgtttgtttgctgaggatcgcatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atttcctcagagcagccagaatggttctttagtttgtttgtttgctgaggatcgcatgac 327

                                                                       
Query: 121 cctccaaggagaacgtgtaagactcaggagactcgttgatttttcagtgttgaaaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctccaaggagaacgtgtaagactcaggagactcgttgatttttcagtgttgaaaacaaa 267

                                                                       
Query: 181 tgacatgataactggacaggcttggatccagagggtgcaactacaaacaaaatcaagagg 240
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 266 tgacatgataactggacaggcttggatccagagggggcaacaacaaacaaaatcaagagg 207

                 
Query: 241 tacttc 246
           ||||||
Sbjct: 206 tacttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)