BAC Information

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BAC

Clone NameMSMg01-074J24
Chromosome3 (Build37)
Map Location 152,266,595 - 152,424,406
singlet/doubletdoublet
Overlap geneAk5, LOC100040705, Pigk
Upstream geneIfi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3
Downstream geneRpl29-ps1, St6galnac5, LOC100040750, St6galnac3, EG545578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074J24.T7 (MSMg01no074_j24.b1)MSMg01-074J24.TJ (MSMg01no074_j24.g1)
ACCAG297636AG297637
length714770
length of high quality
(start - end)
248 (72 - 319)329 (121 - 449)
definitionCHROMAT_FILE: MSMg01no074_j24.b1 PHD_FILE: MSMg01no074_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:02 2005CHROMAT_FILE: MSMg01no074_j24.g1 PHD_FILE: MSMg01no074_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,266,595 - 152,266,841)(152,424,078 - 152,424,406)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAGAGGAGCCGCGG
AATTCCATCCTATTCCATCCACTCTGCTGGCCCTTCCTCTGGGTTGTGCA
TGTGTCCTCTCCTGGGCTAGCTCCAGGTTGTTACATCCATCACATCATCT
GTGGTACCCATTCTATGAGGATAGCTCATGGCTGGCCATACACCATCTTT
GAGTTTTGGAGATGTTTTCCTGGATATCAAACCTGGCCTTGCATATAGTA
TGCAAATGCTCTATTGCTGAGCTACAACTCTGGCCATTCCACACAATATT
TGGGTTTCTAAAAGTCCCTTTTATTCCAAGGCCTGTCAATGAATAGTTGT
TGAACAAAGGTTACTGTCCCACTGTTGCCTCGTGAGGGCACCAGGATGAT
ACAGGTCCTCATTACAGCTGAATAACTCCGGAAATCATCTAGGGAAGAGG
AAAGCCAGGTCCCCAGCAGAGCAGAACAGCATGCTGTCTGCAGTATACCA
AAGGTGTGTGGCATCTGAATGACAGTTGATCCTCATGTGTATTTGAACAA
CTGGCTTCTAGCTATGGTACTGTTTGTAGAGACTCTGAGTTGTATCCTCT
CTGGACTAAGTGCTAAATTGGTGCCCTGGCTTTGATGGCACCTATACTTA
CACTTCTTCTAGCTTGCTCTCTGCCTTGTGCTTGTGGCTAAAATGTGTTC
TCCCCAATTCTTGG
TTTTTTTTTTTTTTTNCTTTNTCTCCTTTCCCTCCTTTCCCCCCCTTTTC
TTTTTTCATGAAGTGGTAGGCCTGGCGGCGCCTGTTCAAAAATGGAGGTG
AACTATATAATTTCCGCGAAATTCTTTCTCTCTTGAAGATTATTTATGTT
GGCTTTCCTGGGATTAGTAATGGCCATTAATCTGGAGTTGGATCATGGAG
ATGAGCTAATTTACAAGGGAGAGTTTTCAGTTCAAGAGCGCCCTCTTCTG
TAGCCGAAACGAACTGCAGCTTACTTAATAAAGTAGCCGGTGTAGCGGGG
TGGGATTTTTAAATACTCCCTTGCTTTCATAAAGCCCTTCCTTACTCTTT
TTGTCCACATCTAACACTTCTGGTTACCGTGTCCCCACCGTCCTCTTCAC
AACGTCCTCTGTTCTCATAGAATTGTCGCTTTCCTAATCATGGTGCATAA
GGTCACCTAGCTCTCTACTCAGCATTTGTAATTCTGATAAAACTACAGGT
GCTCATTCCAACTTACGCATGGTTGGAACCCCAAACACCTCCTTTTTTCC
TCTTATGAATAATGTGTGTTCTCCTTCTTAAGGTCATTCTTTTACTTAAG
ATTTTGAGAGCTCTACTGACAGTATTTCATGAAGGACCAATTTCTGCGCA
CCAGGATGTGCCGTTATTCCTTTGTGATATTGTGATCTCAAACAATGGTA
TTTCTCCTCACACAGTCCGAGTCTCCTACATTGGGAAACGGGCTCATGAT
TTAGTTCCAGTAAAGCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_j24.b1 MSMg01no074_j24.b1 CHROMAT_FILE:
MSMg01no074_j24.b1 PHD_FILE: MSMg01no074_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:02 2005
         (248 letters)



>mm_chr3_152266395_152267042
          Length = 648

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgctggcccttcctctgggttgtgcatgtgtcctctcctgggctagctccaggttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctctgctggcccttcctctgggttgtgcatgtgtcctctcctgggctagcttcaggttgt 260

                                                                       
Query: 61  tacatccatcacatcatctgtggtacccattctatgaggatagctcatggctggccatac 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatccatcacatcctctgtggtacccattctatgaggatagctcatggctggccatac 320

                                                                       
Query: 121 accatctttgagttttggagatgttttcctggatatcaaacctggccttgcatatagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatctttgagttttggagatgttttcctggatatcaaacctggccttgcatatagtat 380

                                                                       
Query: 181 gcaaatgctctattgctgagctacaactctggccattccacacaatatttgggtttctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gcaaatgctctattgctgagctacaactctggccattccacacaatatttgtgtttctaa 440

                  
Query: 241 aagtccc 247
           || ||||
Sbjct: 441 aaatccc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no074_j24.g1 MSMg01no074_j24.g1 CHROMAT_FILE:
MSMg01no074_j24.g1 PHD_FILE: MSMg01no074_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:03 2005
         (329 letters)



>mm_chr3_152423716_152424444
          Length = 729

 Score =  582 bits (301), Expect = e-171
 Identities = 322/329 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttctctcttgaagattatttatgttggctttcctgggattagtaatggccattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 attctttctctcttgaagattatttatgttggctttcctgggattagtaatggccattaa 632

                                                                       
Query: 61  tctggagttggatcatggagatgagctaatttacaagggagagttttcagttcaagagcg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tctggagttggatcaaggagatgagctaatttacaagggagagttttcagttcaagagcg 572

                                                                       
Query: 121 ccctcttctgtagccgaaacgaactgcagcttacttaataaagtagccggtgtagcgggg 180
           |||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 571 ccctcttctgtagctgaaacgaactgcagcttacttaataaagtagccgatgtaccgggg 512

                                                                       
Query: 181 tgggatttttaaatactcccttgctttcataaagcccttccttactctttttgtccacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgggatttttaaatactcccttgctttcataaagcccttccttactctttttgtccacat 452

                                                                       
Query: 241 ctaacacttctggttaccgtgtccccaccgtcctcttcacaacgtcctctgttctcatag 300
           |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 451 ctaacacttctgggcaccgtgtccccaccctcctcttcacaacgtcctctgttctcatag 392

                                        
Query: 301 aattgtcgctttcctaatcatggtgcata 329
           |||||||||||||||||||||||||||||
Sbjct: 391 aattgtcgctttcctaatcatggtgcata 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)