Query= MSMg01no074_n02.b1 MSMg01no074_n02.b1 CHROMAT_FILE:
MSMg01no074_n02.b1 PHD_FILE: MSMg01no074_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:18 2005
(620 letters)
>mm_chr3_110069243_110070262
Length = 1020
Score = 992 bits (513), Expect = 0.0
Identities = 594/627 (94%), Gaps = 14/627 (2%)
Strand = Plus / Plus
Query: 7 gaattcagagatctgcctgcctctgttaa-tacagaggttaaactagctggataggaccc 65
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct: 202 gaattcagagatctgcctgcctctgttaagtacagaggttaaactagctgggtaggatcc 261
Query: 66 caccctggaattactattctgaccacacctaaatctaaattccctatgtcccaggctaac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caccctggaattactattctgaccacacctaaatctaaattccctatgtcccaggctaac 321
Query: 126 ctcaaactcaggaattagcctgcattcctatctgcttgcctctgtatctttgtgacaatc 185
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 322 ctcaaacttaggaattagcctgcattcgtatctgcttgtctctgtatctttgtgacaatc 381
Query: 186 tggctcacagtgtagctgcctctgttcccttagatctgtgaagctccttatataattcgt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggctcacagtgtagctgcctctgttcccttagatctgtgaagctccttatataattcgt 441
Query: 246 attacatccttatagttttgcataggtgagaaattaaatatttttgaaac-catgttttt 304
|||||||| ||||| ||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct: 442 attacatctttatatttttgcataggtgagaaattatatatttttgaa-ctcatgttttt 500
Query: 305 agagttccttcccacagccttaagggttgtcctgaaggtcttagtgtttatcactttgct 364
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagttccttcccatagccttaagggttgtcctgaaggtcttagtgtttatcactttgct 560
Query: 365 gagacgttagccacaccttcacatcccagactcatgctgtctctggattatcatggaatc 424
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 gagacattagccacaccttcacatcccagactcatgctgtctcttgattatcatggaatc 620
Query: 425 attaaccttaaccaagtggggg----agggcaatttctcagagggacatggaggagcctc 480
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 attaaccttaaccaagggggggggggagggcaatttctcagagggacatggaggagcctc 680
Query: 481 atcattctgtcctcaccaaggccttgttgtgttcagcatctctcccttttttgtttttaa 540
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 atcattctgtccccatcaaggccttgttgtattcagcatctctcccttttttgtttttaa 740
Query: 541 tttgagggaacaaatgttgaccttgagttttttccttgcttgatgtagacta-------c 593
|| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 741 ttcgagggaacaaatgctgaccttgagttttttccttgcttgatgtagactaaaagaacc 800
Query: 594 agtaagagagagctgagctgtgtggag 620
| ||||||||||||||||||| |||||
Sbjct: 801 aataagagagagctgagctgtctggag 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_n02.g1 MSMg01no074_n02.g1 CHROMAT_FILE:
MSMg01no074_n02.g1 PHD_FILE: MSMg01no074_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:18 2005
(620 letters)
>mm_chr3_110191620_110192639
Length = 1020
Score = 1168 bits (604), Expect = 0.0
Identities = 616/620 (99%)
Strand = Plus / Minus
Query: 1 actactcacaagtgactgaaggatctagagttcaaggcagacttcctttagctacctgat 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 762 actactcacaagtgactgaaggatctagagttcaaggcaaacttcctttagctacctgat 703
Query: 61 gagtttgagatcaacctgaaatgcattaaactctttctaaataaaaacagagaatgggaa 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 702 gagtttgagatcaacctgaaatgcattaaactctgtctaaataaaaacagagaatgggaa 643
Query: 121 aagcatgtatcacctattttaagtatctgagaatgctttagattcactgttatatgagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aagcatgtatcacctattttaagtatctgagaatgctttagattcactgttatatgagtc 583
Query: 181 aatattctctcaactgcaaacagtagaaatggattccatttatttcaacaagaaggcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aatattctctcaactgcaaacagtagaaatggattccatttatttcaacaagaaggcaat 523
Query: 241 acattcagatgatattaagatagataacccacaggttttaagggagaggtcagtaaaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acattcagatgatattaagatagataacccacaggttttaagggagaggtcagtaaaacc 463
Query: 301 agtggtcctgtaacaggcaaagagagaaattgactatggaatatcagtaacaaattataa 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 462 agtggtcctgtaacaggcaaagagagaaattgactatgggatatcagtaacaaattataa 403
Query: 361 caacatccctacatactgtaaaccaagagcttagctttgtgttcccacattcaaaaccta 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caacattcctacatactgtaaaccaagagcttagctttgtgttcccacattcaaaaccta 343
Query: 421 aaattatagtgtctattgacctcttccagcatgcgtacattaaaaataaagatttctgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaattatagtgtctattgacctcttccagcatgcgtacattaaaaataaagatttctgtt 283
Query: 481 tcacagaaacattacatctaaaattaacaggggtaagggtaaggtatttgcaatatacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcacagaaacattacatctaaaattaacaggggtaagggtaaggtatttgcaatatacaa 223
Query: 541 aaccaacaaggtatttatagcgagcatctgatgggaatttttaaaaattaattagaaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aaccaacaaggtatttatagcgagcatctgatgggaatttttaaaaattaattagaaaaa 163
Query: 601 cagaaatcccaatagcataa 620
||||||||||||||||||||
Sbjct: 162 cagaaatcccaatagcataa 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
