BAC Information

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BAC

Clone NameMSMg01-075J01
Chromosome3 (Build37)
Map Location 64,869,790 - 64,870,238
singlet/doubletsinglet
Overlap genenone
Upstream geneEG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075J01.T7 (MSMg01no075_j01.b1)MSMg01-075J01.TJ (MSMg01no075_j01.g1)
ACCAG298350AG298351
length680686
length of high quality
(start - end)
453 (41 - 493)510 (74 - 583)
definitionCHROMAT_FILE: MSMg01no075_j01.b1 PHD_FILE: MSMg01no075_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:15 2005CHROMAT_FILE: MSMg01no075_j01.g1 PHD_FILE: MSMg01no075_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTAACTACTGCAACGACTGGAGTAGGATCCGGCCAAAGCTGAGGTGAAA
TAGATTATATCACAGCAGTGTGCAGACTGTGATCTGTACAGCCAGGGATG
ATCAGGTAGCATGGAAACAAGATTGTTTTAGCTCATTGTGATGGTTTGTA
TATTCTTGGACCAGGGAGTGGCACCATTTGGAGGTGTGGCCTTGTTGGAA
TAAGTGTGACCTGGTTGGAGTAGGTGTGTCACTATGGGTGTGGACATAAG
ATCTTCAACCTAGTTGCCTGGAAGTTAGTCTTCCACTAGCAGCCTTCAGA
TGAAGACATAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTGGATACT
GCCATGCTCCCACCTTGATGATAATGAACTGAACCTCTGAACCTGTAAGC
TATCCCCAATTAAATGTTGTTTTATAAGATTTGCCTTGGTCATGGTGTCT
GTTCACAGCAGTAAACCCCTAATTAAGACACTCATGATGGGATCAATCAC
TTTATTTGCATTAGTATCAGATAATTTATTTTCATAGATAACAGTAAAGC
TATCATCACTGTCTCTGGAATGTCTTACTTTTTTTTTTCAATGTAAAAAT
CTAACTGAGGTTGACCCTAAGTTCCCTACT
NCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGATCTGTACCCCATTTTTA
ATAGGGTTATTTGTTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATAT
ATTAGATATTAGCCCTCTATTGGATGTAGGGTTGGTAAAGATCTTTTCCC
ACTCTGTTGGTTGCCTTTTTGTCTTATAGTGTCCTTTGCCTTACAGAAGC
TTTGCAATTTTATGAGGTCCCATTTGTCACTTGATCTTTGACAAAGAAGC
TAAAACCACCCAGTGGGAAAAAGACTGCATTTTCAACAAATGGTGCTGGT
TCAACTGGCAGTTAGCATGTAGAAAAATGCAAATTGATCCATTCTTATCT
CCCTGTACAAAGCTCAAGTCCAAGTGGATTAAGAACCTCCACATAAAAAC
AGACACACTGAAACTAATAGAAAAGTAAGTGGGGAAAAGTCTCAAGCACA
TGGACACAGGGGAGCATTTCCTGAACAGAACACCAATGGCTTATGCCCTA
AAATCAAGAATCTACACCCCTTTCTTTCTCTGGCTTTTGGTCTCCAGAAA
GTGCAAGCCCTAGCCTCTGTCTATTTTACCTTGATCAAATCTTGCTCGGA
GGAAAGTTAGAACAACTCATTTCTGCCAAAGTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_j01.b1 MSMg01no075_j01.b1 CHROMAT_FILE:
MSMg01no075_j01.b1 PHD_FILE: MSMg01no075_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:15 2005
         (453 letters)



>mm_chr3_64869586_64870438
          Length = 853

 Score =  845 bits (437), Expect = 0.0
 Identities = 446/449 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaactactgcaacgactggagtaggatccggccaaagctgaggtgaaataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaactactgcaacgactggagtaggatccggccaaagctgaggtgaaataga 264

                                                                       
Query: 65  ttatatcacagcagtgtgcagactgtgatctgtacagccagggatgatcaggtagcatgg 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ttatatcacagcagtgtgcagactgtgctctgtacagccagggatgatcaggtagcatgg 324

                                                                       
Query: 125 aaacaagattgttttagctcattgtgatggtttgtatattcttggaccagggagtggcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 aaacaagattgttttagctcattgtgatggtttgtatattcttggaccaggaagtggcac 384

                                                                       
Query: 185 catttggaggtgtggccttgttggaataagtgtgacctggttggagtaggtgtgtcacta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttggaggtgtggccttgttggaataagtgtgacctggttggagtaggtgtgtcacta 444

                                                                       
Query: 245 tgggtgtggacataagatcttcaacctagttgcctggaagttagtcttccactagcagcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggtgtggacataagatcttcaacctagttgcctggaagttagtcttccactagcagcc 504

                                                                       
Query: 305 ttcagatgaagacatagaactctcagctcctcctgcaccatgcctgcctggatactgcca 364
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ttcagatgaagacatagaactctcagctcctcctgcaccatgcctccctggatactgcca 564

                                                                       
Query: 365 tgctcccaccttgatgataatgaactgaacctctgaacctgtaagctatccccaattaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctcccaccttgatgataatgaactgaacctctgaacctgtaagctatccccaattaaa 624

                                        
Query: 425 tgttgttttataagatttgccttggtcat 453
           |||||||||||||||||||||||||||||
Sbjct: 625 tgttgttttataagatttgccttggtcat 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)